Analysis of interatomic Contacts of Structural Units in PDB entry:
9QYG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QYG entry

There are 2 chains in PDB entry 9QYG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 310MET 489
B
 PHE 309VAL 497
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 12 helices in PDB entry 9QYG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
325 329Right-handed 310
Helix 2
AA2
A
346 357Right-handed alpha
Helix 3
AA3
A
358 371Right-handed alpha
Helix 4
AA4
A
401 420Right-handed alpha
Helix 5
AA5
A
438 457Right-handed alpha
Helix 6
AA6
A
472 489Right-handed alpha
Helix 7
AA7
B
325 329Right-handed 310
Helix 8
AA8
B
346 357Right-handed alpha
Helix 9
AA9
B
358 371Right-handed alpha
Helix 10
AB1
B
401 420Right-handed alpha
Helix 11
AB2
B
438 457Right-handed alpha
Helix 12
AB3
B
472 489Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 9QYG. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
378 382first strand
Strand 2
A
390 395anti-parallel
Strand 3
A
333 338parallel
Strand 4
A
424 427parallel
Strand 5
A
462 468parallel
Strand 6
A
317 323parallel
Strand 7
A
311 314anti-parallel
Strand 8
B
494 495parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
311 314first strand
Strand 2
B
317 323anti-parallel
Strand 3
B
462 468parallel
Strand 4
B
424 428parallel
Strand 5
B
333 338parallel
Strand 6
B
390 395parallel
Strand 7
B
378 382anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il