Analysis of interatomic Contacts of Structural Units in PDB entry:
9QYH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QYH entry

There are 2 chains in PDB entry 9QYH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 310LEU 490
B
 ASN 310SER 496
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 9QYH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
325 328Right-handed 310
Helix 2
AA2
A
346 357Right-handed alpha
Helix 3
AA3
A
358 366Right-handed alpha
Helix 4
AA4
A
401 420Right-handed alpha
Helix 5
AA5
A
438 457Right-handed alpha
Helix 6
AA6
A
472 489Right-handed alpha
Helix 7
AA7
B
325 328Right-handed 310
Helix 8
AA8
B
346 357Right-handed alpha
Helix 9
AA9
B
358 367Right-handed alpha
Helix 10
AB1
B
401 420Right-handed alpha
Helix 11
AB2
B
432 436Right-handed 310
Helix 12
AB3
B
438 457Right-handed alpha
Helix 13
AB4
B
472 493Right-handed alpha
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There are 2 sheets in PDB entry 9QYH. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
311 314first strand
Strand 2
A
317 323anti-parallel
Strand 3
A
462 468parallel
Strand 4
A
424 428parallel
Strand 5
A
330 338parallel
Strand 6
A
387 395parallel
Strand 7
A
378 382anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
311 314first strand
Strand 2
B
317 323anti-parallel
Strand 3
B
462 468parallel
Strand 4
B
424 428parallel
Strand 5
B
330 338parallel
Strand 6
B
387 395parallel
Strand 7
B
378 382anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il