Analysis of interatomic Contacts of Structural Units in PDB entry:
9QYI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QYI entry

There are 3 chains in PDB entry 9QYI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 3	TYR 432
B	ASP 3	TYR 432
D	ASP 3	LYS 426

There are177 helices in PDB entry 9QYI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	11	13	Right-handed 310
Helix 2	AA2	A	14	27	Right-handed alpha
Helix 3	AA3	A	29	40	Right-handed alpha
Helix 4	AA4	A	57	70	Right-handed alpha
Helix 5	AA5	A	85	95	Right-handed alpha
Helix 6	AA6	A	106	117	Right-handed alpha
Helix 7	AA7	A	133	143	Right-handed alpha
Helix 8	AA8	A	144	150	Right-handed 310
Helix 9	AA9	A	157	170	Right-handed alpha
Helix 10	AB1	A	183	188	Right-handed alpha
Helix 11	AB2	A	189	208	Right-handed alpha
Helix 12	AB3	A	222	235	Right-handed alpha
Helix 13	AB4	A	245	255	Right-handed alpha
Helix 14	AB5	A	261	266	Right-handed alpha
Helix 15	AB6	A	283	288	Right-handed alpha
Helix 16	AB7	A	307	315	Right-handed alpha
Helix 17	AB8	A	341	343	Right-handed 310
Helix 18	AB9	A	344	350	Right-handed alpha
Helix 19	AC1	A	354	375	Right-handed alpha
Helix 20	AC2	A	376	379	Right-handed 310
Helix 21	AC3	A	387	400	Right-handed alpha
Helix 22	AC4	A	401	403	Right-handed 310
Helix 23	AC5	A	410	418	Right-handed alpha
Helix 24	AC6	B	11	13	Right-handed 310
Helix 25	AC7	B	14	27	Right-handed alpha
Helix 26	AC8	B	29	40	Right-handed alpha
Helix 27	AC9	B	57	70	Right-handed alpha
Helix 28	AD1	B	85	95	Right-handed alpha
Helix 29	AD2	B	106	117	Right-handed alpha
Helix 30	AD3	B	133	143	Right-handed alpha
Helix 31	AD4	B	144	150	Right-handed 310
Helix 32	AD5	B	157	170	Right-handed alpha
Helix 33	AD6	B	183	188	Right-handed alpha
Helix 34	AD7	B	189	208	Right-handed alpha
Helix 35	AD8	B	222	235	Right-handed alpha
Helix 36	AD9	B	245	255	Right-handed alpha
Helix 37	AE1	B	261	266	Right-handed alpha
Helix 38	AE2	B	283	288	Right-handed alpha
Helix 39	AE3	B	307	315	Right-handed alpha
Helix 40	AE4	B	341	343	Right-handed 310
Helix 41	AE5	B	344	349	Right-handed alpha
Helix 42	AE6	B	354	375	Right-handed alpha
Helix 43	AE7	B	376	379	Right-handed 310
Helix 44	AE8	B	387	400	Right-handed alpha
Helix 45	AE9	B	410	418	Right-handed alpha
Helix 46	AF1	D	11	13	Right-handed 310
Helix 47	AF2	D	14	27	Right-handed alpha
Helix 48	AF3	D	29	40	Right-handed alpha
Helix 49	AF4	D	57	70	Right-handed alpha
Helix 50	AF5	D	85	95	Right-handed alpha
Helix 51	AF6	D	106	117	Right-handed alpha
Helix 52	AF7	D	133	143	Right-handed alpha
Helix 53	AF8	D	144	150	Right-handed 310
Helix 54	AF9	D	157	170	Right-handed alpha
Helix 55	AG1	D	183	188	Right-handed alpha
Helix 56	AG2	D	189	208	Right-handed alpha
Helix 57	AG3	D	222	235	Right-handed alpha
Helix 58	AG4	D	245	255	Right-handed alpha
Helix 59	AG5	D	261	266	Right-handed alpha
Helix 60	AG6	D	283	288	Right-handed alpha
Helix 61	AG7	D	307	315	Right-handed alpha
Helix 62	AG8	D	341	343	Right-handed 310
Helix 63	AG9	D	344	350	Right-handed alpha
Helix 64	AH1	D	354	375	Right-handed alpha
Helix 65	AH2	D	376	379	Right-handed 310
Helix 66	AH3	D	387	398	Right-handed alpha
Helix 67	AH4	D	410	418	Right-handed alpha
Helix 68	AH5	E	11	13	Right-handed 310
Helix 69	AH6	E	14	28	Right-handed alpha
Helix 70	AH7	E	29	40	Right-handed alpha
Helix 71	AH8	E	57	70	Right-handed alpha
Helix 72	AH9	E	85	95	Right-handed alpha
Helix 73	AI1	E	106	117	Right-handed alpha
Helix 74	AI2	E	133	143	Right-handed alpha
Helix 75	AI3	E	144	150	Right-handed 310
Helix 76	AI4	E	157	170	Right-handed alpha
Helix 77	AI5	E	183	188	Right-handed alpha
Helix 78	AI6	E	189	208	Right-handed alpha
Helix 79	AI7	E	222	235	Right-handed alpha
Helix 80	AI8	E	245	255	Right-handed alpha
Helix 81	AI9	E	261	266	Right-handed alpha
Helix 82	AJ1	E	283	288	Right-handed alpha
Helix 83	AJ2	E	307	315	Right-handed alpha
Helix 84	AJ3	E	341	343	Right-handed 310
Helix 85	AJ4	E	344	350	Right-handed alpha
Helix 86	AJ5	E	354	375	Right-handed alpha
Helix 87	AJ6	E	376	379	Right-handed 310
Helix 88	AJ7	E	387	398	Right-handed alpha
Helix 89	AJ8	E	399	403	Right-handed 310
Helix 90	AJ9	E	410	418	Right-handed alpha
Helix 91	AK1	F	11	13	Right-handed 310
Helix 92	AK2	F	14	27	Right-handed alpha
Helix 93	AK3	F	29	40	Right-handed alpha
Helix 94	AK4	F	57	70	Right-handed alpha
Helix 95	AK5	F	85	95	Right-handed alpha
Helix 96	AK6	F	106	117	Right-handed alpha
Helix 97	AK7	F	133	143	Right-handed alpha
Helix 98	AK8	F	144	150	Right-handed 310
Helix 99	AK9	F	157	170	Right-handed alpha
Helix 100	AL1	F	183	188	Right-handed alpha
Helix 101	AL2	F	189	208	Right-handed alpha
Helix 102	AL3	F	222	235	Right-handed alpha
Helix 103	AL4	F	245	255	Right-handed alpha
Helix 104	AL5	F	261	266	Right-handed alpha
Helix 105	AL6	F	283	288	Right-handed alpha
Helix 106	AL7	F	307	315	Right-handed alpha
Helix 107	AL8	F	341	343	Right-handed 310
Helix 108	AL9	F	344	350	Right-handed alpha
Helix 109	AM1	F	354	375	Right-handed alpha
Helix 110	AM2	F	376	379	Right-handed 310
Helix 111	AM3	F	387	400	Right-handed alpha
Helix 112	AM4	F	410	418	Right-handed alpha
Helix 113	AM5	G	11	13	Right-handed 310
Helix 114	AM6	G	14	27	Right-handed alpha
Helix 115	AM7	G	29	40	Right-handed alpha
Helix 116	AM8	G	57	70	Right-handed alpha
Helix 117	AM9	G	85	95	Right-handed alpha
Helix 118	AN1	G	106	117	Right-handed alpha
Helix 119	AN2	G	133	143	Right-handed alpha
Helix 120	AN3	G	144	147	Right-handed 310
Helix 121	AN4	G	157	170	Right-handed alpha
Helix 122	AN5	G	183	188	Right-handed alpha
Helix 123	AN6	G	189	208	Right-handed alpha
Helix 124	AN7	G	222	235	Right-handed alpha
Helix 125	AN8	G	245	255	Right-handed alpha
Helix 126	AN9	G	261	266	Right-handed alpha
Helix 127	AO1	G	283	288	Right-handed alpha
Helix 128	AO2	G	307	315	Right-handed alpha
Helix 129	AO3	G	341	343	Right-handed 310
Helix 130	AO4	G	344	350	Right-handed alpha
Helix 131	AO5	G	354	375	Right-handed alpha
Helix 132	AO6	G	387	398	Right-handed alpha
Helix 133	AO7	G	410	418	Right-handed alpha
Helix 134	AO8	C	11	13	Right-handed 310
Helix 135	AO9	C	14	27	Right-handed alpha
Helix 136	AP1	C	29	40	Right-handed alpha
Helix 137	AP2	C	57	70	Right-handed alpha
Helix 138	AP3	C	85	95	Right-handed alpha
Helix 139	AP4	C	106	117	Right-handed alpha
Helix 140	AP5	C	133	143	Right-handed alpha
Helix 141	AP6	C	144	147	Right-handed 310
Helix 142	AP7	C	157	170	Right-handed alpha
Helix 143	AP8	C	183	188	Right-handed alpha
Helix 144	AP9	C	189	208	Right-handed alpha
Helix 145	AQ1	C	222	235	Right-handed alpha
Helix 146	AQ2	C	245	255	Right-handed alpha
Helix 147	AQ3	C	261	266	Right-handed alpha
Helix 148	AQ4	C	283	288	Right-handed alpha
Helix 149	AQ5	C	307	315	Right-handed alpha
Helix 150	AQ6	C	341	343	Right-handed 310
Helix 151	AQ7	C	344	350	Right-handed alpha
Helix 152	AQ8	C	354	375	Right-handed alpha
Helix 153	AQ9	C	376	379	Right-handed 310
Helix 154	AR1	C	387	403	Right-handed alpha
Helix 155	AR2	C	410	418	Right-handed alpha
Helix 156	AR3	H	11	13	Right-handed 310
Helix 157	AR4	H	14	27	Right-handed alpha
Helix 158	AR5	H	29	40	Right-handed alpha
Helix 159	AR6	H	57	70	Right-handed alpha
Helix 160	AR7	H	85	95	Right-handed alpha
Helix 161	AR8	H	106	116	Right-handed alpha
Helix 162	AR9	H	133	143	Right-handed alpha
Helix 163	AS1	H	144	150	Right-handed 310
Helix 164	AS2	H	157	171	Right-handed alpha
Helix 165	AS3	H	183	188	Right-handed alpha
Helix 166	AS4	H	189	208	Right-handed alpha
Helix 167	AS5	H	222	235	Right-handed alpha
Helix 168	AS6	H	245	255	Right-handed alpha
Helix 169	AS7	H	261	266	Right-handed alpha
Helix 170	AS8	H	283	288	Right-handed alpha
Helix 171	AS9	H	307	315	Right-handed alpha
Helix 172	AT1	H	341	343	Right-handed 310
Helix 173	AT2	H	344	350	Right-handed alpha
Helix 174	AT3	H	354	375	Right-handed alpha
Helix 175	AT4	H	376	379	Right-handed 310
Helix 176	AT5	H	387	400	Right-handed alpha
Helix 177	AT6	H	410	418	Right-handed alpha

There are 23 sheets in PDB entry 9QYI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	99	100	first strand
Strand 2	A	73	77	parallel
Strand 3	A	49	53	parallel
Strand 4	A	127	130	parallel
Strand 5	A	152	155	parallel
Strand 6	A	177	179	parallel
Strand 7	A	383	384	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	119	120	first strand
Strand 2	A	123	124	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	258	259	first strand
Strand 2	A	238	242	parallel
Strand 3	A	215	219	parallel
Strand 4	A	271	274	parallel
Strand 5	A	294	298	parallel
Strand 6	A	335	339	parallel
Strand 7	A	325	329	anti-parallel
Strand 8	A	317	322	anti-parallel

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There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	8	9	first strand
Strand 2	B	99	101	parallel
Strand 3	B	73	77	parallel
Strand 4	B	49	53	parallel
Strand 5	B	127	130	parallel
Strand 6	B	153	155	parallel
Strand 7	B	177	179	parallel
Strand 8	B	383	384	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	120	first strand
Strand 2	B	123	124	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	258	259	first strand
Strand 2	B	238	242	parallel
Strand 3	B	215	219	parallel
Strand 4	B	271	274	parallel
Strand 5	B	294	298	parallel
Strand 6	B	335	339	parallel
Strand 7	B	325	329	anti-parallel
Strand 8	B	317	322	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	8	9	first strand
Strand 2	D	99	101	parallel
Strand 3	D	73	77	parallel
Strand 4	D	49	53	parallel
Strand 5	D	127	130	parallel
Strand 6	D	152	155	parallel
Strand 7	D	177	179	parallel
Strand 8	D	383	384	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	119	120	first strand
Strand 2	D	123	124	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	258	259	first strand
Strand 2	D	238	242	parallel
Strand 3	D	215	219	parallel
Strand 4	D	271	274	parallel
Strand 5	D	294	298	parallel
Strand 6	D	335	339	parallel
Strand 7	D	325	329	anti-parallel
Strand 8	D	317	322	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	8	9	first strand
Strand 2	E	99	101	parallel
Strand 3	E	73	77	parallel
Strand 4	E	49	53	parallel
Strand 5	E	127	130	parallel
Strand 6	E	152	155	parallel
Strand 7	E	177	179	parallel
Strand 8	E	383	384	parallel

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There are 8 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	258	259	first strand
Strand 2	E	238	242	parallel
Strand 3	E	215	219	parallel
Strand 4	E	271	274	parallel
Strand 5	E	294	298	parallel
Strand 6	E	335	339	parallel
Strand 7	E	325	329	anti-parallel
Strand 8	E	317	322	anti-parallel

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There are 7 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	99	100	first strand
Strand 2	F	73	77	parallel
Strand 3	F	49	53	parallel
Strand 4	F	127	130	parallel
Strand 5	F	152	155	parallel
Strand 6	F	177	179	parallel
Strand 7	F	383	384	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	119	120	first strand
Strand 2	F	123	124	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	258	259	first strand
Strand 2	F	238	242	parallel
Strand 3	F	215	219	parallel
Strand 4	F	271	274	parallel
Strand 5	F	294	298	parallel
Strand 6	F	335	339	parallel
Strand 7	F	325	329	anti-parallel
Strand 8	F	317	322	anti-parallel

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There are 8 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	8	9	first strand
Strand 2	G	99	101	parallel
Strand 3	G	73	77	parallel
Strand 4	G	49	53	parallel
Strand 5	G	127	130	parallel
Strand 6	G	152	155	parallel
Strand 7	G	177	179	parallel
Strand 8	G	383	384	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	119	120	first strand
Strand 2	G	123	124	anti-parallel

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There are 8 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	258	259	first strand
Strand 2	G	238	242	parallel
Strand 3	G	215	219	parallel
Strand 4	G	271	274	parallel
Strand 5	G	294	298	parallel
Strand 6	G	335	339	parallel
Strand 7	G	325	329	anti-parallel
Strand 8	G	317	322	anti-parallel

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There are 7 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	99	100	first strand
Strand 2	C	73	77	parallel
Strand 3	C	49	53	parallel
Strand 4	C	127	130	parallel
Strand 5	C	152	155	parallel
Strand 6	C	177	179	parallel
Strand 7	C	383	384	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	119	120	first strand
Strand 2	C	123	124	anti-parallel

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There are 8 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	258	259	first strand
Strand 2	C	238	242	parallel
Strand 3	C	215	219	parallel
Strand 4	C	271	274	parallel
Strand 5	C	294	298	parallel
Strand 6	C	335	339	parallel
Strand 7	C	325	329	anti-parallel
Strand 8	C	317	322	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	99	100	first strand
Strand 2	H	73	77	parallel
Strand 3	H	49	53	parallel
Strand 4	H	127	130	parallel
Strand 5	H	152	155	parallel
Strand 6	H	177	179	parallel
Strand 7	H	383	384	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	119	120	first strand
Strand 2	H	123	124	anti-parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	258	259	first strand
Strand 2	H	238	242	parallel
Strand 3	H	215	219	parallel
Strand 4	H	271	274	parallel
Strand 5	H	294	298	parallel
Strand 6	H	335	339	parallel
Strand 7	H	325	329	anti-parallel
Strand 8	H	317	322	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QYI

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QYI