Analysis of interatomic Contacts of Structural Units in PDB entry:
9QYP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9QYP entry

There are 3 chains in PDB entry 9QYP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 MET 1GLN 259
A
 MET 1LEU 260
B
 MET 1GLN 259
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 9QYP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
13 18Right-handed 310
Helix 2
AA2
C
30 34Right-handed 310
Helix 3
AA3
C
64 67Right-handed 310
Helix 4
AA4
C
68 78Right-handed alpha
Helix 5
AA5
C
93 112Right-handed alpha
Helix 6
AA6
C
113 119Right-handed alpha
Helix 7
AA7
C
131 144Right-handed alpha
Helix 8
AA8
C
184 192Right-handed alpha
Helix 9
AA9
C
209 213Right-handed 310
Helix 10
AB1
C
215 231Right-handed alpha
Helix 11
AB2
C
233 240Right-handed 310
Helix 12
AB3
C
255 259Right-handed 310
Helix 13
AB4
A
13 18Right-handed 310
Helix 14
AB5
A
64 67Right-handed 310
Helix 15
AB6
A
68 78Right-handed alpha
Helix 16
AB7
A
93 112Right-handed alpha
Helix 17
AB8
A
113 118Right-handed alpha
Helix 18
AB9
A
131 144Right-handed alpha
Helix 19
AC1
A
184 192Right-handed alpha
Helix 20
AC2
A
209 213Right-handed 310
Helix 21
AC3
A
215 231Right-handed alpha
Helix 22
AC4
A
233 240Right-handed 310
Helix 23
AC5
B
13 18Right-handed 310
Helix 24
AC6
B
30 34Right-handed 310
Helix 25
AC7
B
64 67Right-handed 310
Helix 26
AC8
B
68 77Right-handed alpha
Helix 27
AC9
B
93 111Right-handed alpha
Helix 28
AD1
B
113 118Right-handed alpha
Helix 29
AD2
B
131 144Right-handed alpha
Helix 30
AD3
B
184 192Right-handed alpha
Helix 31
AD4
B
209 213Right-handed 310
Helix 32
AD5
B
215 231Right-handed alpha
Helix 33
AD6
B
233 240Right-handed 310
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There are 6 sheets in PDB entry 9QYP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
23 29first strand
Strand 2
C
40 46anti-parallel
Strand 3
C
80 85anti-parallel
Strand 4
C
52 58parallel
Strand 5
C
120 130parallel
Strand 6
C
150 153parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
168 173first strand
Strand 2
C
198 203parallel
Strand 3
C
248 253anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
23 29first strand
Strand 2
A
40 46anti-parallel
Strand 3
A
81 85anti-parallel
Strand 4
A
52 58parallel
Strand 5
A
120 130parallel
Strand 6
A
150 153parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
168 173first strand
Strand 2
A
198 203parallel
Strand 3
A
248 253anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
23 29first strand
Strand 2
B
40 46anti-parallel
Strand 3
B
81 85anti-parallel
Strand 4
B
52 58parallel
Strand 5
B
120 130parallel
Strand 6
B
150 153parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
168 173first strand
Strand 2
B
198 203parallel
Strand 3
B
248 253anti-parallel
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