Analysis of interatomic Contacts of Structural Units in PDB entry:
9QZK

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9QZK entry

There are 4 chains in PDB entry 9QZK (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 10	ARG 466
B	ASP 10	ARG 466
C	ASP 10	ARG 466
D	ASP 10	ARG 466

There are116 helices in PDB entry 9QZK. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	15	25	Right-handed alpha
Helix 2	AA2	A	39	42	Right-handed 310
Helix 3	AA3	A	67	76	Right-handed alpha
Helix 4	AA4	A	83	94	Right-handed alpha
Helix 5	AA5	A	102	106	Right-handed 310
Helix 6	AA6	A	115	119	Right-handed 310
Helix 7	AA7	A	137	142	Right-handed alpha
Helix 8	AA8	A	143	145	Right-handed 310
Helix 9	AA9	A	157	159	Right-handed 310
Helix 10	AB1	A	165	167	Right-handed 310
Helix 11	AB2	A	168	182	Right-handed alpha
Helix 12	AB3	A	188	193	Right-handed alpha
Helix 13	AB4	A	199	210	Right-handed alpha
Helix 14	AB5	A	215	225	Right-handed alpha
Helix 15	AB6	A	226	239	Right-handed alpha
Helix 16	AB7	A	250	258	Right-handed alpha
Helix 17	AB8	A	260	275	Right-handed alpha
Helix 18	AB9	A	289	307	Right-handed alpha
Helix 19	AC1	A	315	326	Right-handed alpha
Helix 20	AC2	A	327	337	Right-handed alpha
Helix 21	AC3	A	337	351	Right-handed alpha
Helix 22	AC4	A	355	365	Right-handed alpha
Helix 23	AC5	A	367	379	Right-handed alpha
Helix 24	AC6	A	382	391	Right-handed alpha
Helix 25	AC7	A	401	419	Right-handed alpha
Helix 26	AC8	A	429	437	Right-handed alpha
Helix 27	AC9	A	439	453	Right-handed alpha
Helix 28	AD1	A	453	461	Right-handed alpha
Helix 29	AD2	A	462	466	Right-handed 310
Helix 30	AD3	B	15	25	Right-handed alpha
Helix 31	AD4	B	39	42	Right-handed 310
Helix 32	AD5	B	67	76	Right-handed alpha
Helix 33	AD6	B	83	94	Right-handed alpha
Helix 34	AD7	B	102	106	Right-handed 310
Helix 35	AD8	B	115	117	Right-handed 310
Helix 36	AD9	B	137	141	Right-handed alpha
Helix 37	AE1	B	142	145	Right-handed 310
Helix 38	AE2	B	157	159	Right-handed 310
Helix 39	AE3	B	165	167	Right-handed 310
Helix 40	AE4	B	168	182	Right-handed alpha
Helix 41	AE5	B	188	193	Right-handed alpha
Helix 42	AE6	B	199	210	Right-handed alpha
Helix 43	AE7	B	215	225	Right-handed alpha
Helix 44	AE8	B	226	239	Right-handed alpha
Helix 45	AE9	B	250	258	Right-handed alpha
Helix 46	AF1	B	259	275	Right-handed alpha
Helix 47	AF2	B	289	307	Right-handed alpha
Helix 48	AF3	B	315	326	Right-handed alpha
Helix 49	AF4	B	327	337	Right-handed alpha
Helix 50	AF5	B	337	350	Right-handed alpha
Helix 51	AF6	B	355	365	Right-handed alpha
Helix 52	AF7	B	367	379	Right-handed alpha
Helix 53	AF8	B	382	391	Right-handed alpha
Helix 54	AF9	B	401	419	Right-handed alpha
Helix 55	AG1	B	429	437	Right-handed alpha
Helix 56	AG2	B	439	453	Right-handed alpha
Helix 57	AG3	B	453	461	Right-handed alpha
Helix 58	AG4	B	462	466	Right-handed 310
Helix 59	AG5	C	15	25	Right-handed alpha
Helix 60	AG6	C	39	42	Right-handed 310
Helix 61	AG7	C	67	76	Right-handed alpha
Helix 62	AG8	C	83	94	Right-handed alpha
Helix 63	AG9	C	102	106	Right-handed 310
Helix 64	AH1	C	115	119	Right-handed 310
Helix 65	AH2	C	137	142	Right-handed alpha
Helix 66	AH3	C	143	145	Right-handed 310
Helix 67	AH4	C	157	159	Right-handed 310
Helix 68	AH5	C	165	167	Right-handed 310
Helix 69	AH6	C	168	182	Right-handed alpha
Helix 70	AH7	C	188	193	Right-handed alpha
Helix 71	AH8	C	199	210	Right-handed alpha
Helix 72	AH9	C	215	225	Right-handed alpha
Helix 73	AI1	C	226	238	Right-handed alpha
Helix 74	AI2	C	250	258	Right-handed alpha
Helix 75	AI3	C	260	275	Right-handed alpha
Helix 76	AI4	C	289	308	Right-handed alpha
Helix 77	AI5	C	315	326	Right-handed alpha
Helix 78	AI6	C	327	337	Right-handed alpha
Helix 79	AI7	C	337	350	Right-handed alpha
Helix 80	AI8	C	355	365	Right-handed alpha
Helix 81	AI9	C	367	379	Right-handed alpha
Helix 82	AJ1	C	382	391	Right-handed alpha
Helix 83	AJ2	C	401	419	Right-handed alpha
Helix 84	AJ3	C	429	436	Right-handed alpha
Helix 85	AJ4	C	439	452	Right-handed alpha
Helix 86	AJ5	C	453	461	Right-handed alpha
Helix 87	AJ6	C	462	466	Right-handed 310
Helix 88	AJ7	D	15	25	Right-handed alpha
Helix 89	AJ8	D	39	42	Right-handed 310
Helix 90	AJ9	D	67	76	Right-handed alpha
Helix 91	AK1	D	83	94	Right-handed alpha
Helix 92	AK2	D	102	106	Right-handed 310
Helix 93	AK3	D	115	119	Right-handed 310
Helix 94	AK4	D	137	142	Right-handed alpha
Helix 95	AK5	D	143	145	Right-handed 310
Helix 96	AK6	D	157	159	Right-handed 310
Helix 97	AK7	D	165	167	Right-handed 310
Helix 98	AK8	D	168	182	Right-handed alpha
Helix 99	AK9	D	188	193	Right-handed alpha
Helix 100	AL1	D	199	210	Right-handed alpha
Helix 101	AL2	D	215	224	Right-handed alpha
Helix 102	AL3	D	226	239	Right-handed alpha
Helix 103	AL4	D	250	258	Right-handed alpha
Helix 104	AL5	D	259	275	Right-handed alpha
Helix 105	AL6	D	289	307	Right-handed alpha
Helix 106	AL7	D	315	325	Right-handed alpha
Helix 107	AL8	D	327	337	Right-handed alpha
Helix 108	AL9	D	337	351	Right-handed alpha
Helix 109	AM1	D	355	365	Right-handed alpha
Helix 110	AM2	D	367	379	Right-handed alpha
Helix 111	AM3	D	382	391	Right-handed alpha
Helix 112	AM4	D	401	419	Right-handed alpha
Helix 113	AM5	D	429	436	Right-handed alpha
Helix 114	AM6	D	439	453	Right-handed alpha
Helix 115	AM7	D	453	461	Right-handed alpha
Helix 116	AM8	D	462	466	Right-handed 310

There are 12 sheets in PDB entry 9QZK. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	33	first strand
Strand 2	A	131	136	anti-parallel
Strand 3	A	121	125	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	80	81	first strand
Strand 2	A	44	50	anti-parallel
Strand 3	A	55	61	anti-parallel
Strand 4	A	110	113	parallel
Strand 5	A	148	150	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	65	first strand
Strand 2	A	154	155	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	33	first strand
Strand 2	B	131	136	anti-parallel
Strand 3	B	121	125	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	80	81	first strand
Strand 2	B	44	50	anti-parallel
Strand 3	B	55	61	anti-parallel
Strand 4	B	110	113	parallel
Strand 5	B	148	150	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	65	first strand
Strand 2	B	154	155	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	30	33	first strand
Strand 2	C	131	136	anti-parallel
Strand 3	C	121	125	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	81	first strand
Strand 2	C	44	50	anti-parallel
Strand 3	C	55	61	anti-parallel
Strand 4	C	110	113	parallel
Strand 5	C	148	150	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	64	65	first strand
Strand 2	C	154	155	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	30	33	first strand
Strand 2	D	131	136	anti-parallel
Strand 3	D	121	125	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	80	81	first strand
Strand 2	D	44	50	anti-parallel
Strand 3	D	55	61	anti-parallel
Strand 4	D	110	113	parallel
Strand 5	D	148	150	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	64	65	first strand
Strand 2	D	154	155	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9QZK

Analysis of interatomic Contacts of Structural Units in PDB entry:
9QZK