Analysis of interatomic Contacts of Structural Units in PDB entry:
9R1R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9R1R entry

There are 3 chains in PDB entry 9R1R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
GLU 3TYR 1332
B
GLU 3TYR 1332
C
GLU 3TYR 1332
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 78 helices in PDB entry 9R1R. Click on helix of interest for CSU analysis.
Helix
number
Helix
ID
Chain
ID
Initial
residue
Terminal
residue
Helix class
Helix 1
AA1
A
17 21Right-handed 310
Helix 2
AA2
A
30 33Right-handed 310
Helix 3
AA3
A
116 126Right-handed alpha
Helix 4
AA4
A
375 379Right-handed 310
Helix 5
AA5
A
505 515Right-handed alpha
Helix 6
AA6
A
596 607Right-handed alpha
Helix 7
AA7
A
778 783Right-handed 310
Helix 8
AA8
A
882 888Right-handed alpha
Helix 9
AA9
A
891 899Right-handed alpha
Helix 10
AB1
A
901 928Right-handed alpha
Helix 11
AB2
A
935 946Right-handed alpha
Helix 12
AB3
A
954 958Right-handed 310
Helix 13
AB4
A
975 985Right-handed alpha
Helix 14
AB5
A
997 1002Right-handed alpha
Helix 15
AB6
A
1008 1015Right-handed alpha
Helix 16
AB7
A
1026 1044Right-handed alpha
Helix 17
AB8
A
1052 1067Right-handed alpha
Helix 18
AB9
A
1072 1093Right-handed alpha
Helix 19
AC1
A
1096 1101Right-handed 310
Helix 20
AC2
A
1104 1128Right-handed alpha
Helix 21
AC3
A
1129 1131Right-handed 310
Helix 22
AC4
A
1139 1147Right-handed alpha
Helix 23
AC5
A
1148 1196Right-handed alpha
Helix 24
AC6
A
1273 1277Right-handed 310
Helix 25
AC7
A
1303 1305Right-handed 310
Helix 26
AC8
A
1321 1325Right-handed 310
Helix 27
AC9
B
17 21Right-handed 310
Helix 28
AD1
B
30 33Right-handed 310
Helix 29
AD2
B
116 126Right-handed alpha
Helix 30
AD3
B
375 379Right-handed 310
Helix 31
AD4
B
505 515Right-handed alpha
Helix 32
AD5
B
596 607Right-handed alpha
Helix 33
AD6
B
778 783Right-handed 310
Helix 34
AD7
B
882 888Right-handed alpha
Helix 35
AD8
B
891 899Right-handed alpha
Helix 36
AD9
B
901 928Right-handed alpha
Helix 37
AE1
B
935 946Right-handed alpha
Helix 38
AE2
B
954 958Right-handed 310
Helix 39
AE3
B
975 985Right-handed alpha
Helix 40
AE4
B
997 1002Right-handed alpha
Helix 41
AE5
B
1008 1015Right-handed alpha
Helix 42
AE6
B
1026 1044Right-handed alpha
Helix 43
AE7
B
1052 1067Right-handed alpha
Helix 44
AE8
B
1072 1093Right-handed alpha
Helix 45
AE9
B
1096 1101Right-handed 310
Helix 46
AF1
B
1104 1128Right-handed alpha
Helix 47
AF2
B
1129 1131Right-handed 310
Helix 48
AF3
B
1139 1147Right-handed alpha
Helix 49
AF4
B
1148 1196Right-handed alpha
Helix 50
AF5
B
1273 1277Right-handed 310
Helix 51
AF6
B
1303 1305Right-handed 310
Helix 52
AF7
B
1321 1325Right-handed 310
Helix 53
AF8
C
17 21Right-handed 310
Helix 54
AF9
C
30 33Right-handed 310
Helix 55
AG1
C
116 126Right-handed alpha
Helix 56
AG2
C
375 379Right-handed 310
Helix 57
AG3
C
505 515Right-handed alpha
Helix 58
AG4
C
596 607Right-handed alpha
Helix 59
AG5
C
778 783Right-handed 310
Helix 60
AG6
C
882 888Right-handed alpha
Helix 61
AG7
C
891 899Right-handed alpha
Helix 62
AG8
C
901 928Right-handed alpha
Helix 63
AG9
C
935 946Right-handed alpha
Helix 64
AH1
C
954 958Right-handed 310
Helix 65
AH2
C
975 985Right-handed alpha
Helix 66
AH3
C
997 1002Right-handed alpha
Helix 67
AH4
C
1008 1015Right-handed alpha
Helix 68
AH5
C
1026 1044Right-handed alpha
Helix 69
AH6
C
1052 1067Right-handed alpha
Helix 70
AH7
C
1072 1093Right-handed alpha
Helix 71
AH8
C
1096 1101Right-handed 310
Helix 72
AH9
C
1104 1128Right-handed alpha
Helix 73
AI1
C
1129 1131Right-handed 310
Helix 74
AI2
C
1139 1147Right-handed alpha
Helix 75
AI3
C
1148 1196Right-handed alpha
Helix 76
AI4
C
1273 1277Right-handed 310
Helix 77
AI5
C
1303 1305Right-handed 310
Helix 78
AI6
C
1321 1325Right-handed 310
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There are 54 sheets in PDB entry 9R1R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
25 28first strand
Strand 2
A
143 148parallel
Strand 3
A
135 140anti-parallel
Strand 4
A
181 183anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
37 41first strand
Strand 2
A
46 51anti-parallel
Strand 3
A
72 83anti-parallel
Strand 4
A
186 191anti-parallel
Strand 5
A
127 131anti-parallel
Strand 6
A
152 156anti-parallel
Strand 7
A
169 170anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
37 41first strand
Strand 2
A
46 51anti-parallel
Strand 3
A
72 83anti-parallel
Strand 4
A
214 216anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
219 223first strand
Strand 2
A
306 311parallel
Strand 3
A
464 471anti-parallel
Strand 4
A
332 338anti-parallel
Strand 5
A
362 367anti-parallel
Strand 6
A
370 373anti-parallel
Strand 7
A
428 432anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
235 237first strand
Strand 2
A
263 272anti-parallel
Strand 3
A
477 483anti-parallel
Strand 4
A
318 328anti-parallel
Strand 5
A
437 444anti-parallel
Strand 6
A
449 452anti-parallel
Strand 7
A
455 459anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
251 253first strand
Strand 2
B
731 733parallel
Strand 3
B
739 744anti-parallel
Strand 4
B
747 753anti-parallel
Strand 5
B
710 718anti-parallel
Strand 6
B
703 707anti-parallel
Strand 7
B
534 540parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
257 260first strand
Strand 2
A
486 491anti-parallel
Strand 3
A
494 500anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
343 344first strand
Strand 2
A
347 348anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
380 382first strand
Strand 2
A
420 422anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
522 529first strand
Strand 2
A
756 764anti-parallel
Strand 3
A
767 774anti-parallel
Strand 4
A
794 798anti-parallel
Strand 5
A
789 790anti-parallel
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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
534 540first strand
Strand 2
A
703 707parallel
Strand 3
A
710 718anti-parallel
Strand 4
A
747 753anti-parallel
Strand 5
A
739 744anti-parallel
Strand 6
A
731 733anti-parallel
Strand 7
C
251 253parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
546 555first strand
Strand 2
A
576 586parallel
Strand 3
A
676 690parallel
Strand 4
A
632 646anti-parallel
Strand 5
A
566 571anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
546 555first strand
Strand 2
A
576 586parallel
Strand 3
A
676 690parallel
Strand 4
A
653 654anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
662 664first strand
Strand 2
A
670 671anti-parallel
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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
815 821first strand
Strand 2
A
825 828anti-parallel
Strand 3
A
833 835anti-parallel
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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
856 860first strand
Strand 2
A
1235 1241anti-parallel
Strand 3
A
1260 1263anti-parallel
Strand 4
A
1289 1292anti-parallel
Strand 5
A
1299 1301anti-parallel
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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
863 872first strand
Strand 2
A
1222 1232anti-parallel
Strand 3
A
1210 1219anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
878 881first strand
Strand 2
A
1018 1021anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
A
1307 1310first strand
Strand 2
A
1250 1254anti-parallel
Strand 3
A
1244 1246anti-parallel
Strand 4
A
1318 1319parallel
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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
25 28first strand
Strand 2
B
143 148parallel
Strand 3
B
135 140anti-parallel
Strand 4
B
181 183anti-parallel
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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
37 41first strand
Strand 2
B
46 51anti-parallel
Strand 3
B
72 83anti-parallel
Strand 4
B
186 191anti-parallel
Strand 5
B
127 131anti-parallel
Strand 6
B
152 156anti-parallel
Strand 7
B
169 170anti-parallel
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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
37 41first strand
Strand 2
B
46 51anti-parallel
Strand 3
B
72 83anti-parallel
Strand 4
B
214 216anti-parallel
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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
219 223first strand
Strand 2
B
306 311parallel
Strand 3
B
464 471anti-parallel
Strand 4
B
332 338anti-parallel
Strand 5
B
362 367anti-parallel
Strand 6
B
370 373anti-parallel
Strand 7
B
428 432anti-parallel
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There are 7 strands in AC6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
235 237first strand
Strand 2
B
263 272anti-parallel
Strand 3
B
477 483anti-parallel
Strand 4
B
318 328anti-parallel
Strand 5
B
437 444anti-parallel
Strand 6
B
449 452anti-parallel
Strand 7
B
455 459anti-parallel
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There are 7 strands in AC7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
251 253first strand
Strand 2
C
731 733parallel
Strand 3
C
739 744anti-parallel
Strand 4
C
747 753anti-parallel
Strand 5
C
710 718anti-parallel
Strand 6
C
703 707anti-parallel
Strand 7
C
534 540parallel
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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
257 260first strand
Strand 2
B
486 491anti-parallel
Strand 3
B
494 500anti-parallel
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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
343 344first strand
Strand 2
B
347 348anti-parallel
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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
380 382first strand
Strand 2
B
420 422anti-parallel
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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
522 529first strand
Strand 2
B
756 764anti-parallel
Strand 3
B
767 774anti-parallel
Strand 4
B
794 798anti-parallel
Strand 5
B
789 790anti-parallel
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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
546 555first strand
Strand 2
B
576 586parallel
Strand 3
B
676 690parallel
Strand 4
B
632 646anti-parallel
Strand 5
B
566 571anti-parallel
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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
546 555first strand
Strand 2
B
576 586parallel
Strand 3
B
676 690parallel
Strand 4
B
653 654anti-parallel
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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
662 664first strand
Strand 2
B
670 671anti-parallel
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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
815 821first strand
Strand 2
B
825 828anti-parallel
Strand 3
B
833 835anti-parallel
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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
856 860first strand
Strand 2
B
1235 1241anti-parallel
Strand 3
B
1260 1263anti-parallel
Strand 4
B
1289 1292anti-parallel
Strand 5
B
1299 1301anti-parallel
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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
863 872first strand
Strand 2
B
1222 1232anti-parallel
Strand 3
B
1210 1219anti-parallel
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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
878 881first strand
Strand 2
B
1018 1021anti-parallel
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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
B
1307 1310first strand
Strand 2
B
1250 1254anti-parallel
Strand 3
B
1244 1246anti-parallel
Strand 4
B
1318 1319parallel
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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
25 28first strand
Strand 2
C
143 148parallel
Strand 3
C
135 140anti-parallel
Strand 4
C
181 183anti-parallel
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There are 7 strands in AE3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
37 41first strand
Strand 2
C
46 51anti-parallel
Strand 3
C
72 83anti-parallel
Strand 4
C
186 191anti-parallel
Strand 5
C
127 131anti-parallel
Strand 6
C
152 156anti-parallel
Strand 7
C
169 170anti-parallel
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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
37 41first strand
Strand 2
C
46 51anti-parallel
Strand 3
C
72 83anti-parallel
Strand 4
C
214 216anti-parallel
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There are 7 strands in AE5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
219 223first strand
Strand 2
C
306 311parallel
Strand 3
C
464 471anti-parallel
Strand 4
C
332 338anti-parallel
Strand 5
C
362 367anti-parallel
Strand 6
C
370 373anti-parallel
Strand 7
C
428 432anti-parallel
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There are 7 strands in AE6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
235 237first strand
Strand 2
C
263 272anti-parallel
Strand 3
C
477 483anti-parallel
Strand 4
C
318 328anti-parallel
Strand 5
C
437 444anti-parallel
Strand 6
C
449 452anti-parallel
Strand 7
C
455 459anti-parallel
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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
257 260first strand
Strand 2
C
486 491anti-parallel
Strand 3
C
494 500anti-parallel
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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
343 344first strand
Strand 2
C
347 348anti-parallel
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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
380 382first strand
Strand 2
C
420 422anti-parallel
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There are 5 strands in AF1 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
522 529first strand
Strand 2
C
756 764anti-parallel
Strand 3
C
767 774anti-parallel
Strand 4
C
794 798anti-parallel
Strand 5
C
789 790anti-parallel
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There are 5 strands in AF2 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
546 555first strand
Strand 2
C
576 586parallel
Strand 3
C
676 690parallel
Strand 4
C
632 646anti-parallel
Strand 5
C
566 571anti-parallel
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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
546 555first strand
Strand 2
C
576 586parallel
Strand 3
C
676 690parallel
Strand 4
C
653 654anti-parallel
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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
662 664first strand
Strand 2
C
670 671anti-parallel
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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
815 821first strand
Strand 2
C
825 828anti-parallel
Strand 3
C
833 835anti-parallel
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There are 5 strands in AF6 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
856 860first strand
Strand 2
C
1235 1241anti-parallel
Strand 3
C
1260 1263anti-parallel
Strand 4
C
1289 1292anti-parallel
Strand 5
C
1299 1301anti-parallel
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There are 3 strands in AF7 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
863 872first strand
Strand 2
C
1222 1232anti-parallel
Strand 3
C
1210 1219anti-parallel
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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
878 881first strand
Strand 2
C
1018 1021anti-parallel
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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.
Strand
number
Chain
ID
Initial
residue
Terminal
residue
Strand sense
Strand 1
C
1307 1310first strand
Strand 2
C
1250 1254anti-parallel
Strand 3
C
1244 1246anti-parallel
Strand 4
C
1318 1319parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il