Analysis of interatomic Contacts of Structural Units in PDB entry:
9R3N


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9R3N entry

There is 1 chain in PDB entry 9R3N (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO -3ALA 553
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 36 helices in PDB entry 9R3N. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 9Right-handed 310
Helix 2
AA2
A
10 23Right-handed alpha
Helix 3
AA3
A
24 27Right-handed 310
Helix 4
AA4
A
28 36Right-handed alpha
Helix 5
AA5
A
38 43Right-handed alpha
Helix 6
AA6
A
66 80Right-handed alpha
Helix 7
AA7
A
81 92Right-handed alpha
Helix 8
AA8
A
104 110Right-handed 310
Helix 9
AA9
A
123 143Right-handed alpha
Helix 10
AB1
A
162 165Right-handed 310
Helix 11
AB2
A
166 176Right-handed alpha
Helix 12
AB3
A
177 180Right-handed 310
Helix 13
AB4
A
193 203Right-handed alpha
Helix 14
AB5
A
220 239Right-handed alpha
Helix 15
AB6
A
240 242Right-handed 310
Helix 16
AB7
A
243 247Right-handed alpha
Helix 17
AB8
A
254 261Right-handed alpha
Helix 18
AB9
A
264 266Right-handed 310
Helix 19
AC1
A
276 280Right-handed 310
Helix 20
AC2
A
283 285Right-handed 310
Helix 21
AC3
A
286 294Right-handed alpha
Helix 22
AC4
A
294 315Right-handed alpha
Helix 23
AC5
A
316 319Right-handed 310
Helix 24
AC6
A
320 336Right-handed alpha
Helix 25
AC7
A
347 351Right-handed 310
Helix 26
AC8
A
352 366Right-handed alpha
Helix 27
AC9
A
390 395Right-handed 310
Helix 28
AD1
A
396 403Right-handed alpha
Helix 29
AD2
A
420 444Right-handed alpha
Helix 30
AD3
A
446 452Right-handed alpha
Helix 31
AD4
A
456 458Right-handed 310
Helix 32
AD5
A
459 464Right-handed alpha
Helix 33
AD6
A
480 503Right-handed alpha
Helix 34
AD7
A
509 511Right-handed 310
Helix 35
AD8
A
512 527Right-handed alpha
Helix 36
AD9
A
536 551Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 9R3N. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 49first strand
Strand 2
A
54 59anti-parallel
Strand 3
A
471 476anti-parallel
Strand 4
A
409 414parallel
Strand 5
A
340 345parallel
Strand 6
A
383 385parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
117 118first strand
Strand 2
A
121 122anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 189first strand
Strand 2
A
156 160parallel
Strand 3
A
209 214parallel
Strand 4
A
248 252parallel
Strand 5
A
268 270parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il