Analysis of interatomic Contacts of Structural Units in PDB entry:
9R3S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9R3S entry

There are 3 chains in PDB entry 9R3S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 LEU 30SER 390
A
 CYS 33SER 390
C
 GLU 1344GLY 1406
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 9R3S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
39 57Right-handed alpha
Helix 2
AA2
B
74 86Right-handed alpha
Helix 3
AA3
B
100 104Right-handed alpha
Helix 4
AA4
B
137 144Right-handed alpha
Helix 5
AA5
B
200 211Right-handed alpha
Helix 6
AA6
B
264 269Right-handed alpha
Helix 7
AA7
B
339 341Right-handed 310
Helix 8
AA8
B
342 347Right-handed alpha
Helix 9
AA9
A
37 57Right-handed alpha
Helix 10
AB1
A
74 86Right-handed alpha
Helix 11
AB2
A
119 123Right-handed 310
Helix 12
AB3
A
137 144Right-handed alpha
Helix 13
AB4
A
146 148Right-handed 310
Helix 14
AB5
A
200 211Right-handed alpha
Helix 15
AB6
A
281 287Right-handed alpha
Helix 16
AB7
A
337 341Right-handed 310
Helix 17
AB8
C
1368 1373Right-handed alpha
Helix 18
AB9
C
1394 1401Right-handed alpha
Back to top of page

There are 10 sheets in PDB entry 9R3S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
194 199first strand
Strand 2
B
150 159anti-parallel
Strand 3
B
257 262anti-parallel
Strand 4
B
106 112anti-parallel
Strand 5
A
373 384anti-parallel
Strand 6
A
361 370anti-parallel
Strand 7
A
311 313anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 136first strand
Strand 2
B
214 221anti-parallel
Strand 3
B
166 173anti-parallel
Strand 4
B
179 187anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
299 300first strand
Strand 2
B
317 318anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
311 313first strand
Strand 2
B
356 370anti-parallel
Strand 3
B
373 389anti-parallel
Strand 4
A
106 112anti-parallel
Strand 5
A
257 262anti-parallel
Strand 6
A
150 160anti-parallel
Strand 7
A
194 199anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
311 313first strand
Strand 2
B
356 370anti-parallel
Strand 3
B
373 389anti-parallel
Strand 4
A
106 112anti-parallel
Strand 5
A
257 262anti-parallel
Strand 6
A
150 160anti-parallel
Strand 7
A
235 236anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
328 329first strand
Strand 2
C
1385 1386parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 136first strand
Strand 2
A
214 221anti-parallel
Strand 3
A
167 173anti-parallel
Strand 4
A
179 186anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
294 296first strand
Strand 2
A
321 323anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
356 358first strand
Strand 2
A
387 389anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1348 1349first strand
Strand 2
C
1380 1381anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il