Analysis of interatomic Contacts of Structural Units in PDB entry:
9R43


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9R43 entry

There are 2 chains in PDB entry 9R43 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 8THR 448
B
 ALA 8THR 448
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 9R43. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 21Right-handed alpha
Helix 2
AA2
A
39 53Right-handed alpha
Helix 3
AA3
A
100 109Right-handed alpha
Helix 4
AA4
A
110 112Right-handed 310
Helix 5
AA5
A
124 130Right-handed alpha
Helix 6
AA6
A
137 142Right-handed alpha
Helix 7
AA7
A
143 146Right-handed 310
Helix 8
AA8
A
168 179Right-handed alpha
Helix 9
AA9
A
209 221Right-handed alpha
Helix 10
AB1
A
244 248Right-handed 310
Helix 11
AB2
A
262 275Right-handed alpha
Helix 12
AB3
A
290 295Right-handed 310
Helix 13
AB4
A
317 329Right-handed alpha
Helix 14
AB5
A
344 349Right-handed 310
Helix 15
AB6
A
373 387Right-handed alpha
Helix 16
AB7
A
388 391Right-handed 310
Helix 17
AB8
A
401 405Right-handed 310
Helix 18
AB9
A
406 412Right-handed alpha
Helix 19
AC1
A
415 430Right-handed alpha
Helix 20
AC2
B
15 21Right-handed alpha
Helix 21
AC3
B
39 53Right-handed alpha
Helix 22
AC4
B
100 109Right-handed alpha
Helix 23
AC5
B
110 112Right-handed 310
Helix 24
AC6
B
124 130Right-handed alpha
Helix 25
AC7
B
137 142Right-handed alpha
Helix 26
AC8
B
143 146Right-handed 310
Helix 27
AC9
B
168 176Right-handed alpha
Helix 28
AD1
B
209 221Right-handed alpha
Helix 29
AD2
B
222 224Right-handed 310
Helix 30
AD3
B
244 248Right-handed 310
Helix 31
AD4
B
262 275Right-handed alpha
Helix 32
AD5
B
290 295Right-handed 310
Helix 33
AD6
B
317 329Right-handed alpha
Helix 34
AD7
B
344 349Right-handed 310
Helix 35
AD8
B
373 387Right-handed alpha
Helix 36
AD9
B
388 391Right-handed 310
Helix 37
AE1
B
406 412Right-handed alpha
Helix 38
AE2
B
415 430Right-handed alpha
Helix 39
AE3
B
444 448Right-handed 310
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There are 8 sheets in PDB entry 9R43. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
33 36first strand
Strand 2
A
74 77parallel
Strand 3
A
57 60parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
84 87first strand
Strand 2
A
92 96anti-parallel
Strand 3
A
184 191anti-parallel
Strand 4
A
148 154anti-parallel
Strand 5
A
160 163anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 282first strand
Strand 2
A
197 206anti-parallel
Strand 3
A
285 288anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
279 282first strand
Strand 2
A
197 206anti-parallel
Strand 3
A
250 259anti-parallel
Strand 4
A
228 237anti-parallel
Strand 5
A
337 342anti-parallel
Strand 6
A
364 370anti-parallel
Strand 7
A
307 313anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
33 36first strand
Strand 2
B
74 77parallel
Strand 3
B
57 60parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
84 87first strand
Strand 2
B
92 96anti-parallel
Strand 3
B
184 191anti-parallel
Strand 4
B
148 154anti-parallel
Strand 5
B
160 163anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
279 282first strand
Strand 2
B
197 206anti-parallel
Strand 3
B
285 288anti-parallel
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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
279 282first strand
Strand 2
B
197 206anti-parallel
Strand 3
B
250 259anti-parallel
Strand 4
B
228 237anti-parallel
Strand 5
B
337 342anti-parallel
Strand 6
B
364 370anti-parallel
Strand 7
B
307 313anti-parallel
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