Analysis of interatomic Contacts of Structural Units in PDB entry:
9R4T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9R4T entry

There is 1 chain in PDB entry 9R4T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 78ILE 439
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 9R4T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
80 96Right-handed alpha
Helix 2
AA2
A
109 128Right-handed alpha
Helix 3
AA3
A
132 144Right-handed alpha
Helix 4
AA4
A
150 154Right-handed 310
Helix 5
AA5
A
161 180Right-handed alpha
Helix 6
AA6
A
181 197Right-handed alpha
Helix 7
AA7
A
219 237Right-handed alpha
Helix 8
AA8
A
239 258Right-handed alpha
Helix 9
AA9
A
287 291Right-handed 310
Helix 10
AB1
A
292 306Right-handed alpha
Helix 11
AB2
A
308 323Right-handed alpha
Helix 12
AB3
A
324 327Right-handed 310
Helix 13
AB4
A
337 341Right-handed 310
Helix 14
AB5
A
348 350Right-handed 310
Helix 15
AB6
A
351 370Right-handed alpha
Helix 16
AB7
A
377 395Right-handed alpha
Helix 17
AB8
A
424 437Right-handed alpha
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There are 3 sheets in PDB entry 9R4T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
103 104anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 272first strand
Strand 2
A
279 281anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
396 398first strand
Strand 2
A
410 412anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il