Analysis of interatomic Contacts of Structural Units in PDB entry:
9R52


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9R52 entry

There are 2 chains in PDB entry 9R52 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 2HIS 393
B
 MET 1GLY 253
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 9R52. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 47Right-handed alpha
Helix 2
AA2
A
53 61Right-handed alpha
Helix 3
AA3
A
66 83Right-handed alpha
Helix 4
AA4
A
87 118Right-handed alpha
Helix 5
AA5
A
119 121Right-handed 310
Helix 6
AA6
A
122 146Right-handed alpha
Helix 7
AA7
A
164 196Right-handed alpha
Helix 8
AA8
A
224 228Right-handed 310
Helix 9
AA9
A
229 231Right-handed 310
Helix 10
AB1
A
237 241Right-handed 310
Helix 11
AB2
A
243 248Right-handed alpha
Helix 12
AB3
A
265 274Right-handed alpha
Helix 13
AB4
A
280 306Right-handed alpha
Helix 14
AB5
A
356 369Right-handed alpha
Helix 15
AB6
A
373 375Right-handed 310
Helix 16
AB7
A
376 384Right-handed alpha
Helix 17
AB8
A
387 393Right-handed alpha
Helix 18
AB9
B
17 24Right-handed alpha
Helix 19
AC1
B
28 40Right-handed alpha
Helix 20
AC2
B
64 71Right-handed alpha
Helix 21
AC3
B
80 83Right-handed 310
Helix 22
AC4
B
84 90Right-handed alpha
Helix 23
AC5
B
102 115Right-handed alpha
Helix 24
AC6
B
122 124Right-handed 310
Helix 25
AC7
B
139 150Right-handed alpha
Helix 26
AC8
B
154 156Right-handed 310
Helix 27
AC9
B
183 189Right-handed 310
Helix 28
AD1
B
190 196Right-handed 310
Helix 29
AD2
B
224 237Right-handed alpha
Helix 30
AD3
B
246 248Right-handed 310
Helix 31
AD4
B
251 277Right-handed alpha
Helix 32
AD5
C
13 21Right-handed alpha
Helix 33
AD6
C
24 33Right-handed alpha
Helix 34
AD7
C
78 91Right-handed alpha
Helix 35
AD8
C
99 105Right-handed alpha
Helix 36
AD9
C
106 111Right-handed 310
Helix 37
AE1
C
126 130Right-handed 310
Helix 38
AE2
C
143 157Right-handed alpha
Helix 39
AE3
C
158 169Right-handed alpha
Helix 40
AE4
C
176 183Right-handed alpha
Helix 41
AE5
C
184 187Right-handed 310
Helix 42
AE6
C
193 199Right-handed alpha
Helix 43
AE7
C
215 218Right-handed 310
Helix 44
AE8
C
222 228Right-handed alpha
Helix 45
AE9
C
234 239Right-handed 310
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There are 10 sheets in PDB entry 9R52. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
29 36first strand
Strand 2
A
17 23anti-parallel
Strand 3
A
3 8anti-parallel
Strand 4
C
54 59parallel
Strand 5
C
46 50anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
154 155first strand
Strand 2
A
158 159anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 215first strand
Strand 2
A
262 263parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 236first strand
Strand 2
A
254 257anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
326 332first strand
Strand 2
A
335 343anti-parallel
Strand 3
A
349 355anti-parallel
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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 62first strand
Strand 2
B
45 49anti-parallel
Strand 3
B
97 101parallel
Strand 4
B
126 132parallel
Strand 5
B
206 209parallel
Strand 6
B
218 222anti-parallel
Strand 7
B
9 15anti-parallel
Strand 8
B
240 244anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 164first strand
Strand 2
B
167 172anti-parallel
Strand 3
B
177 181anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
34 38first strand
Strand 2
C
3 8parallel
Strand 3
C
65 71parallel
Strand 4
C
92 98parallel
Strand 5
C
135 137parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
74 75first strand
Strand 2
C
124 125anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
204 207first strand
Strand 2
C
210 213anti-parallel
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