Analysis of interatomic Contacts of Structural Units in PDB entry:
9R5A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9R5A entry

There are 3 chains in PDB entry 9R5A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4VAL 310
B
 GLU 5VAL 310
C
 SER 4GLY 16
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 9R5A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 29Right-handed alpha
Helix 2
AA2
A
38 44Right-handed alpha
Helix 3
AA3
A
44 57Right-handed alpha
Helix 4
AA4
A
68 77Right-handed alpha
Helix 5
AA5
A
87 92Right-handed 310
Helix 6
AA6
A
93 105Right-handed alpha
Helix 7
AA7
A
127 145Right-handed alpha
Helix 8
AA8
A
158 162Right-handed alpha
Helix 9
AA9
A
192 204Right-handed alpha
Helix 10
AB1
A
205 210Right-handed 310
Helix 11
AB2
A
218 220Right-handed 310
Helix 12
AB3
A
225 237Right-handed alpha
Helix 13
AB4
A
246 254Right-handed alpha
Helix 14
AB5
A
258 273Right-handed alpha
Helix 15
AB6
A
290 294Right-handed alpha
Helix 16
AB7
A
301 308Right-handed alpha
Helix 17
AB8
B
18 29Right-handed alpha
Helix 18
AB9
B
38 43Right-handed alpha
Helix 19
AC1
B
44 46Right-handed 310
Helix 20
AC2
B
47 57Right-handed alpha
Helix 21
AC3
B
68 77Right-handed alpha
Helix 22
AC4
B
87 92Right-handed 310
Helix 23
AC5
B
93 105Right-handed alpha
Helix 24
AC6
B
127 146Right-handed alpha
Helix 25
AC7
B
158 162Right-handed alpha
Helix 26
AC8
B
192 204Right-handed alpha
Helix 27
AC9
B
205 210Right-handed 310
Helix 28
AD1
B
218 220Right-handed 310
Helix 29
AD2
B
225 237Right-handed alpha
Helix 30
AD3
B
246 254Right-handed alpha
Helix 31
AD4
B
258 273Right-handed alpha
Helix 32
AD5
B
290 294Right-handed alpha
Helix 33
AD6
B
301 306Right-handed alpha
Helix 34
AD7
B
307 310Right-handed 310
Helix 35
AD8
C
18 29Right-handed alpha
Helix 36
AD9
C
38 44Right-handed alpha
Helix 37
AE1
C
47 57Right-handed alpha
Helix 38
AE2
C
68 77Right-handed alpha
Helix 39
AE3
C
87 92Right-handed 310
Helix 40
AE4
C
93 105Right-handed alpha
Helix 41
AE5
C
127 146Right-handed alpha
Helix 42
AE6
C
158 162Right-handed alpha
Helix 43
AE7
C
192 204Right-handed alpha
Helix 44
AE8
C
205 210Right-handed 310
Helix 45
AE9
C
218 220Right-handed 310
Helix 46
AF1
C
225 237Right-handed alpha
Helix 47
AF2
C
246 254Right-handed alpha
Helix 48
AF3
C
258 273Right-handed alpha
Helix 49
AF4
C
290 294Right-handed alpha
Helix 50
AF5
C
301 307Right-handed alpha
Helix 51
AF6
C
308 310Right-handed 310
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There are 12 sheets in PDB entry 9R5A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 63first strand
Strand 2
A
33 37parallel
Strand 3
A
9 12parallel
Strand 4
A
81 84parallel
Strand 5
A
109 111parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 153first strand
Strand 2
A
212 215parallel
Strand 3
A
287 289parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 157first strand
Strand 2
A
187 191parallel
Strand 3
A
222 224anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 181first strand
Strand 2
A
241 245parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
60 63first strand
Strand 2
B
33 37parallel
Strand 3
B
9 12parallel
Strand 4
B
81 84parallel
Strand 5
B
109 111parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 153first strand
Strand 2
B
212 215parallel
Strand 3
B
287 289parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
156 157first strand
Strand 2
B
187 191parallel
Strand 3
B
222 224anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 181first strand
Strand 2
B
241 245parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
60 63first strand
Strand 2
C
33 37parallel
Strand 3
C
9 12parallel
Strand 4
C
81 84parallel
Strand 5
C
109 111parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
150 153first strand
Strand 2
C
212 215parallel
Strand 3
C
287 289parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
156 157first strand
Strand 2
C
187 191parallel
Strand 3
C
222 224anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
177 181first strand
Strand 2
C
241 245parallel
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