Analysis of interatomic Contacts of Structural Units in PDB entry:
9R5I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9R5I entry

There are 4 chains in PDB entry 9R5I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 2	HIS 393
B	MET 1	TYR 282
C	VAL 2	GLU 241
D	GLY 2	GLU 378

There are 91 helices in PDB entry 9R5I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	47	Right-handed alpha
Helix 2	AA2	A	51	53	Right-handed 310
Helix 3	AA3	A	54	60	Right-handed alpha
Helix 4	AA4	A	61	63	Right-handed 310
Helix 5	AA5	A	66	83	Right-handed alpha
Helix 6	AA6	A	87	113	Right-handed alpha
Helix 7	AA7	A	113	118	Right-handed alpha
Helix 8	AA8	A	122	146	Right-handed alpha
Helix 9	AA9	A	164	196	Right-handed alpha
Helix 10	AB1	A	224	228	Right-handed 310
Helix 11	AB2	A	229	231	Right-handed 310
Helix 12	AB3	A	237	241	Right-handed 310
Helix 13	AB4	A	243	248	Right-handed alpha
Helix 14	AB5	A	265	274	Right-handed alpha
Helix 15	AB6	A	280	306	Right-handed alpha
Helix 16	AB7	A	356	369	Right-handed alpha
Helix 17	AB8	A	373	375	Right-handed 310
Helix 18	AB9	A	376	384	Right-handed alpha
Helix 19	AC1	A	387	393	Right-handed alpha
Helix 20	AC2	B	17	24	Right-handed alpha
Helix 21	AC3	B	28	40	Right-handed alpha
Helix 22	AC4	B	64	71	Right-handed alpha
Helix 23	AC5	B	81	83	Right-handed 310
Helix 24	AC6	B	84	90	Right-handed alpha
Helix 25	AC7	B	102	115	Right-handed alpha
Helix 26	AC8	B	122	124	Right-handed 310
Helix 27	AC9	B	139	151	Right-handed alpha
Helix 28	AD1	B	154	156	Right-handed 310
Helix 29	AD2	B	182	186	Right-handed alpha
Helix 30	AD3	B	187	189	Right-handed 310
Helix 31	AD4	B	192	196	Right-handed 310
Helix 32	AD5	B	224	237	Right-handed alpha
Helix 33	AD6	B	251	277	Right-handed alpha
Helix 34	AD7	C	13	21	Right-handed alpha
Helix 35	AD8	C	22	24	Right-handed 310
Helix 36	AD9	C	25	33	Right-handed alpha
Helix 37	AE1	C	78	91	Right-handed alpha
Helix 38	AE2	C	99	105	Right-handed alpha
Helix 39	AE3	C	106	111	Right-handed 310
Helix 40	AE4	C	126	130	Right-handed 310
Helix 41	AE5	C	143	156	Right-handed alpha
Helix 42	AE6	C	158	169	Right-handed alpha
Helix 43	AE7	C	176	183	Right-handed alpha
Helix 44	AE8	C	184	187	Right-handed 310
Helix 45	AE9	C	193	198	Right-handed alpha
Helix 46	AF1	C	215	218	Right-handed 310
Helix 47	AF2	C	222	228	Right-handed alpha
Helix 48	AF3	C	234	239	Right-handed 310
Helix 49	AF4	D	42	47	Right-handed alpha
Helix 50	AF5	D	53	60	Right-handed alpha
Helix 51	AF6	D	61	63	Right-handed 310
Helix 52	AF7	D	66	83	Right-handed alpha
Helix 53	AF8	D	87	113	Right-handed alpha
Helix 54	AF9	D	113	118	Right-handed alpha
Helix 55	AG1	D	122	146	Right-handed alpha
Helix 56	AG2	D	164	196	Right-handed alpha
Helix 57	AG3	D	224	228	Right-handed 310
Helix 58	AG4	D	229	231	Right-handed 310
Helix 59	AG5	D	237	241	Right-handed 310
Helix 60	AG6	D	243	248	Right-handed alpha
Helix 61	AG7	D	265	274	Right-handed alpha
Helix 62	AG8	D	281	306	Right-handed alpha
Helix 63	AG9	D	356	369	Right-handed alpha
Helix 64	AH1	D	373	375	Right-handed 310
Helix 65	AH2	D	376	384	Right-handed alpha
Helix 66	AH3	D	387	393	Right-handed alpha
Helix 67	AH4	E	13	21	Right-handed alpha
Helix 68	AH5	E	22	24	Right-handed 310
Helix 69	AH6	E	25	33	Right-handed alpha
Helix 70	AH7	E	78	91	Right-handed alpha
Helix 71	AH8	E	99	105	Right-handed alpha
Helix 72	AH9	E	106	111	Right-handed 310
Helix 73	AI1	E	126	130	Right-handed 310
Helix 74	AI2	E	143	156	Right-handed alpha
Helix 75	AI3	E	158	169	Right-handed alpha
Helix 76	AI4	E	176	183	Right-handed alpha
Helix 77	AI5	E	193	199	Right-handed alpha
Helix 78	AI6	E	215	218	Right-handed 310
Helix 79	AI7	E	222	228	Right-handed alpha
Helix 80	AI8	E	234	239	Right-handed 310
Helix 81	AI9	F	17	24	Right-handed alpha
Helix 82	AJ1	F	28	40	Right-handed alpha
Helix 83	AJ2	F	64	71	Right-handed alpha
Helix 84	AJ3	F	81	83	Right-handed 310
Helix 85	AJ4	F	84	90	Right-handed alpha
Helix 86	AJ5	F	102	115	Right-handed alpha
Helix 87	AJ6	F	122	124	Right-handed 310
Helix 88	AJ7	F	139	150	Right-handed alpha
Helix 89	AJ8	F	190	194	Right-handed 310
Helix 90	AJ9	F	224	238	Right-handed alpha
Helix 91	AK1	F	251	277	Right-handed alpha

There are 22 sheets in PDB entry 9R5I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	17	23	anti-parallel
Strand 3	A	34	36	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	31	first strand
Strand 2	A	17	23	anti-parallel
Strand 3	A	3	8	anti-parallel
Strand 4	C	54	59	parallel
Strand 5	C	46	50	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	154	155	first strand
Strand 2	A	158	159	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	216	first strand
Strand 2	A	262	264	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	233	236	first strand
Strand 2	A	254	257	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	326	332	first strand
Strand 2	A	335	343	anti-parallel
Strand 3	A	349	355	anti-parallel

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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	62	first strand
Strand 2	B	45	49	anti-parallel
Strand 3	B	97	101	parallel
Strand 4	B	126	132	parallel
Strand 5	B	206	209	parallel
Strand 6	B	218	222	anti-parallel
Strand 7	B	9	15	anti-parallel
Strand 8	B	240	244	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	158	164	first strand
Strand 2	B	167	172	anti-parallel
Strand 3	B	177	181	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	34	38	first strand
Strand 2	C	3	8	parallel
Strand 3	C	65	71	parallel
Strand 4	C	92	98	parallel
Strand 5	C	135	137	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	75	first strand
Strand 2	C	124	125	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	207	first strand
Strand 2	C	210	213	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	31	first strand
Strand 2	D	17	23	anti-parallel
Strand 3	D	34	36	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	29	31	first strand
Strand 2	D	17	23	anti-parallel
Strand 3	D	3	8	anti-parallel
Strand 4	E	54	59	parallel
Strand 5	E	46	50	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	154	155	first strand
Strand 2	D	158	159	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	214	215	first strand
Strand 2	D	262	263	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	233	236	first strand
Strand 2	D	254	257	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	326	331	first strand
Strand 2	D	336	343	anti-parallel
Strand 3	D	349	355	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	34	38	first strand
Strand 2	E	3	8	parallel
Strand 3	E	65	71	parallel
Strand 4	E	92	98	parallel
Strand 5	E	135	137	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	74	75	first strand
Strand 2	E	124	125	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	204	207	first strand
Strand 2	E	210	213	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	57	62	first strand
Strand 2	F	45	51	anti-parallel
Strand 3	F	97	101	parallel
Strand 4	F	126	132	parallel
Strand 5	F	206	209	parallel
Strand 6	F	218	222	anti-parallel
Strand 7	F	9	15	anti-parallel
Strand 8	F	240	244	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	158	164	first strand
Strand 2	F	167	172	anti-parallel
Strand 3	F	177	181	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9R5I

Analysis of interatomic Contacts of Structural Units in PDB entry:
9R5I