Analysis of interatomic Contacts of Structural Units in PDB entry:
9R6M


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9R6M entry

There are 2 chains in PDB entry 9R6M (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 4PRO 256
B
 SER 3PRO 256
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 9R6M. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 31Right-handed alpha
Helix 2
AA2
A
44 46Right-handed 310
Helix 3
AA3
A
47 53Right-handed alpha
Helix 4
AA4
A
80 85Right-handed alpha
Helix 5
AA5
A
95 102Right-handed alpha
Helix 6
AA6
A
105 119Right-handed alpha
Helix 7
AA7
A
130 136Right-handed alpha
Helix 8
AA8
A
138 156Right-handed alpha
Helix 9
AA9
A
168 172Right-handed 310
Helix 10
AB1
A
181 206Right-handed alpha
Helix 11
AB2
A
218 223Right-handed alpha
Helix 12
AB3
A
235 238Right-handed 310
Helix 13
AB4
A
239 248Right-handed alpha
Helix 14
AB5
A
249 254Right-handed 310
Helix 15
AB6
B
17 31Right-handed alpha
Helix 16
AB7
B
44 46Right-handed 310
Helix 17
AB8
B
47 55Right-handed alpha
Helix 18
AB9
B
79 87Right-handed alpha
Helix 19
AC1
B
95 100Right-handed alpha
Helix 20
AC2
B
105 119Right-handed alpha
Helix 21
AC3
B
130 136Right-handed alpha
Helix 22
AC4
B
138 156Right-handed alpha
Helix 23
AC5
B
158 160Right-handed 310
Helix 24
AC6
B
168 172Right-handed 310
Helix 25
AC7
B
179 198Right-handed alpha
Helix 26
AC8
B
199 204Right-handed alpha
Helix 27
AC9
B
218 224Right-handed alpha
Helix 28
AD1
B
235 238Right-handed 310
Helix 29
AD2
B
239 249Right-handed alpha
Helix 30
AD3
B
250 254Right-handed 310
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There are 4 sheets in PDB entry 9R6M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
60 61first strand
Strand 2
A
38 42parallel
Strand 3
A
7 11parallel
Strand 4
A
230 233parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 93first strand
Strand 2
A
122 127parallel
Strand 3
A
162 166parallel
Strand 4
A
207 210parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 42first strand
Strand 2
B
6 11parallel
Strand 3
B
230 233parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
62 63first strand
Strand 2
B
90 93parallel
Strand 3
B
122 127parallel
Strand 4
B
162 166parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il