Analysis of interatomic Contacts of Structural Units in PDB entry:
9R6O


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9R6O entry

There are 2 chains in PDB entry 9R6O (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 16CYS 286
B
 ASP 327THR 603
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 9R6O. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
89 92Right-handed 310
Helix 2
AA2
B
332 338Right-handed alpha
Helix 3
AA3
B
359 367Right-handed alpha
Helix 4
AA4
B
378 383Right-handed alpha
Helix 5
AA5
B
398 406Right-handed 310
Helix 6
AA6
B
411 417Right-handed alpha
Helix 7
AA7
B
436 438Right-handed 310
Helix 8
AA8
B
446 452Right-handed alpha
Helix 9
AA9
B
455 459Right-handed 310
Helix 10
AB1
B
530 534Right-handed 310
Helix 11
AB2
B
566 568Right-handed 310
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There are 13 sheets in PDB entry 9R6O. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
26 27first strand
Strand 2
A
86 87parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
35 36first strand
Strand 2
A
76 77anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
270 273anti-parallel
Strand 3
A
282 285anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
68 69first strand
Strand 2
A
259 266anti-parallel
Strand 3
A
102 108anti-parallel
Strand 4
A
207 215anti-parallel
Strand 5
A
218 223anti-parallel
Strand 6
A
231 236anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
81 82first strand
Strand 2
A
250 251parallel
Strand 3
A
170 171parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
244 247anti-parallel
Strand 3
A
125 128anti-parallel
Strand 4
A
137 140anti-parallel
Strand 5
A
150 160anti-parallel
Strand 6
A
142 147anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 98first strand
Strand 2
A
244 247anti-parallel
Strand 3
A
125 128anti-parallel
Strand 4
A
137 140anti-parallel
Strand 5
A
150 160anti-parallel
Strand 6
A
193 201anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 114first strand
Strand 2
A
117 118anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
349 353first strand
Strand 2
B
387 396anti-parallel
Strand 3
B
583 595anti-parallel
Strand 4
B
426 434anti-parallel
Strand 5
B
371 375anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
349 353first strand
Strand 2
B
387 396anti-parallel
Strand 3
B
583 595anti-parallel
Strand 4
B
579 580anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
466 470first strand
Strand 2
B
573 577anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
473 475first strand
Strand 2
B
538 540anti-parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
552 553first strand
Strand 2
B
570 571anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il