Analysis of interatomic Contacts of Structural Units in PDB entry:
9R6Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9R6Q entry

There are 2 chains in PDB entry 9R6Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 16	ASP 289
B	LEU 328	THR 603

There are 9 helices in PDB entry 9R6Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	89	92	Right-handed 310
Helix 2	AA2	A	287	289	Right-handed 310
Helix 3	AA3	B	332	338	Right-handed alpha
Helix 4	AA4	B	344	348	Right-handed 310
Helix 5	AA5	B	359	366	Right-handed alpha
Helix 6	AA6	B	378	383	Right-handed 310
Helix 7	AA7	B	401	406	Right-handed 310
Helix 8	AA8	B	412	417	Right-handed alpha
Helix 9	AA9	B	446	452	Right-handed alpha

There are 13 sheets in PDB entry 9R6Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	26	27	first strand
Strand 2	A	86	87	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	69	first strand
Strand 2	A	265	274	anti-parallel
Strand 3	A	280	285	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	76	77	first strand
Strand 2	A	260	262	anti-parallel
Strand 3	A	102	108	anti-parallel
Strand 4	A	207	215	anti-parallel
Strand 5	A	218	224	anti-parallel
Strand 6	A	231	237	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	81	82	first strand
Strand 2	A	250	251	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	114	first strand
Strand 2	A	117	121	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	193	199	first strand
Strand 2	A	150	160	anti-parallel
Strand 3	A	137	147	anti-parallel
Strand 4	A	124	128	anti-parallel
Strand 5	A	244	248	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	341	342	first strand
Strand 2	B	439	440	parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	353	first strand
Strand 2	B	387	396	anti-parallel
Strand 3	B	583	595	anti-parallel
Strand 4	B	426	434	anti-parallel
Strand 5	B	368	375	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	349	353	first strand
Strand 2	B	387	396	anti-parallel
Strand 3	B	583	595	anti-parallel
Strand 4	B	579	580	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	466	470	first strand
Strand 2	B	573	577	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	475	first strand
Strand 2	B	538	540	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	552	553	first strand
Strand 2	B	570	571	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	558	559	first strand
Strand 2	B	564	565	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9R6Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
9R6Q