Analysis of interatomic Contacts of Structural Units in PDB entry:
9R6V


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9R6V entry

There are 2 chains in PDB entry 9R6V (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 235SER 373
B
 GLY 235SER 373
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 9 helices in PDB entry 9R6V. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
239 242Right-handed 310
Helix 2
AA2
A
257 262Right-handed 310
Helix 3
AA3
A
301 305Right-handed 310
Helix 4
AA4
A
358 360Right-handed 310
Helix 5
AA5
B
239 242Right-handed 310
Helix 6
AA6
B
258 263Right-handed alpha
Helix 7
AA7
B
301 305Right-handed 310
Helix 8
AA8
B
316 320Right-handed 310
Helix 9
AA9
B
358 360Right-handed 310
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There are 5 sheets in PDB entry 9R6V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 249first strand
Strand 2
A
279 285anti-parallel
Strand 3
A
348 356anti-parallel
Strand 4
A
307 316anti-parallel
Strand 5
A
319 327anti-parallel
Strand 6
B
321 327parallel
Strand 7
B
307 315anti-parallel
Strand 8
B
348 356anti-parallel
Strand 9
B
279 285anti-parallel
Strand 10
B
244 249anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 271first strand
Strand 2
A
364 365anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 340first strand
Strand 2
A
291 299anti-parallel
Strand 3
A
367 372anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 271first strand
Strand 2
B
364 365anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
333 340first strand
Strand 2
B
293 299anti-parallel
Strand 3
B
367 371anti-parallel
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