Analysis of interatomic Contacts of Structural Units in PDB entry:
9R7M

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9R7M entry

There are 48 chains in PDB entry 9R7M (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 1	LEU 32
B	ALA 1	LEU 32
C	ALA 1	LEU 32
D	ALA 1	LEU 32
E	ALA 1	LEU 32
F	ALA 1	LEU 32
G	ALA 1	LEU 32
H	ALA 1	LEU 32
I	ALA 1	LEU 32
J	ALA 1	LEU 32
K	ALA 1	LEU 32
L	ALA 1	LEU 32
M	ALA 1	LEU 32
N	ALA 1	LEU 32
O	ALA 1	LEU 32
P	ALA 1	LEU 32
Q	ALA 1	LEU 32
R	ALA 1	LEU 32
S	ALA 1	LEU 32
T	ALA 1	LEU 32
U	ALA 1	LEU 32
V	ALA 1	LEU 32
W	ALA 1	LEU 32
X	ALA 1	LEU 32
Y	ALA 1	LEU 32
Z	ALA 1	LEU 32
a	ALA 1	LEU 32
b	ALA 1	LEU 32
c	ALA 1	LEU 32
d	ALA 1	LEU 32
e	ALA 1	LEU 32
f	ALA 1	LEU 32
g	ALA 1	LEU 32
h	ALA 1	LEU 32
i	ALA 1	LEU 32
j	ALA 1	LEU 32
k	ALA 1	LEU 32
l	ALA 1	LEU 32
m	ALA 1	LEU 32
n	ALA 1	LEU 32
o	ALA 1	LEU 32
p	ALA 1	LEU 32
q	ALA 1	LEU 32
r	ALA 1	LEU 32
s	ALA 1	LEU 32
t	ALA 1	LEU 32
u	ALA 1	LEU 32
v	ALA 1	LEU 32

There are no helices in PDB entry 9R7M

There are 9 sheets in PDB entry 9R7M. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 21 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	25	31	anti-parallel
Strand 3	A	15	22	anti-parallel
Strand 4	B	15	22	anti-parallel
Strand 5	B	25	31	anti-parallel
Strand 6	B	2	7	anti-parallel
Strand 7	E	2	7	anti-parallel
Strand 8	E	25	31	anti-parallel
Strand 9	E	15	22	anti-parallel
Strand 10	F	15	22	anti-parallel
Strand 11	F	25	32	anti-parallel
Strand 12	F	2	7	anti-parallel
Strand 13	I	2	7	anti-parallel
Strand 14	I	25	31	anti-parallel
Strand 15	I	15	22	anti-parallel
Strand 16	J	15	22	anti-parallel
Strand 17	J	25	31	anti-parallel
Strand 18	J	2	7	anti-parallel
Strand 19	M	2	7	anti-parallel
Strand 20	M	25	31	anti-parallel
Strand 21	M	15	16	anti-parallel

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There are 30 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	4	7	first strand
Strand 2	A	25	31	anti-parallel
Strand 3	A	15	22	anti-parallel
Strand 4	B	15	22	anti-parallel
Strand 5	B	25	31	anti-parallel
Strand 6	B	2	7	anti-parallel
Strand 7	E	2	7	anti-parallel
Strand 8	E	25	31	anti-parallel
Strand 9	E	15	22	anti-parallel
Strand 10	F	15	22	anti-parallel
Strand 11	F	25	32	anti-parallel
Strand 12	F	2	7	anti-parallel
Strand 13	I	2	7	anti-parallel
Strand 14	I	25	31	anti-parallel
Strand 15	I	15	22	anti-parallel
Strand 16	J	15	22	anti-parallel
Strand 17	J	25	31	anti-parallel
Strand 18	J	2	7	anti-parallel
Strand 19	M	2	7	anti-parallel
Strand 20	M	25	31	anti-parallel
Strand 21	M	20	22	anti-parallel
Strand 22	N	15	22	anti-parallel
Strand 23	N	25	32	anti-parallel
Strand 24	N	2	7	anti-parallel
Strand 25	S	2	7	anti-parallel
Strand 26	S	25	31	anti-parallel
Strand 27	S	15	22	anti-parallel
Strand 28	T	15	22	anti-parallel
Strand 29	T	25	31	anti-parallel
Strand 30	T	4	7	anti-parallel

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There are 30 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	7	first strand
Strand 2	C	25	32	anti-parallel
Strand 3	C	15	22	anti-parallel
Strand 4	D	15	22	anti-parallel
Strand 5	D	25	32	anti-parallel
Strand 6	D	2	7	anti-parallel
Strand 7	G	2	7	anti-parallel
Strand 8	G	25	31	anti-parallel
Strand 9	G	15	22	anti-parallel
Strand 10	H	15	22	anti-parallel
Strand 11	H	25	32	anti-parallel
Strand 12	H	2	4	anti-parallel
Strand 13	K	2	7	anti-parallel
Strand 14	K	25	31	anti-parallel
Strand 15	K	15	22	anti-parallel
Strand 16	L	15	22	anti-parallel
Strand 17	L	25	31	anti-parallel
Strand 18	L	2	7	anti-parallel
Strand 19	O	2	7	anti-parallel
Strand 20	O	25	31	anti-parallel
Strand 21	O	15	22	anti-parallel
Strand 22	P	15	22	anti-parallel
Strand 23	P	25	32	anti-parallel
Strand 24	P	2	7	anti-parallel
Strand 25	Q	2	7	anti-parallel
Strand 26	Q	25	32	anti-parallel
Strand 27	Q	15	22	anti-parallel
Strand 28	R	15	22	anti-parallel
Strand 29	R	25	31	anti-parallel
Strand 30	R	4	7	anti-parallel

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There are 18 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	3	7	first strand
Strand 2	U	25	32	anti-parallel
Strand 3	U	15	22	anti-parallel
Strand 4	V	15	22	anti-parallel
Strand 5	V	25	32	anti-parallel
Strand 6	V	2	7	anti-parallel
Strand 7	Y	2	7	anti-parallel
Strand 8	Y	25	32	anti-parallel
Strand 9	Y	15	22	anti-parallel
Strand 10	Z	15	22	anti-parallel
Strand 11	Z	25	31	anti-parallel
Strand 12	Z	2	7	anti-parallel
Strand 13	c	2	7	anti-parallel
Strand 14	c	25	32	anti-parallel
Strand 15	c	15	22	anti-parallel
Strand 16	d	20	22	anti-parallel
Strand 17	d	25	32	anti-parallel
Strand 18	d	15	16	anti-parallel

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There are 42 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	U	3	7	first strand
Strand 2	U	25	32	anti-parallel
Strand 3	U	15	22	anti-parallel
Strand 4	V	15	22	anti-parallel
Strand 5	V	25	32	anti-parallel
Strand 6	V	2	7	anti-parallel
Strand 7	Y	2	7	anti-parallel
Strand 8	Y	25	32	anti-parallel
Strand 9	Y	15	22	anti-parallel
Strand 10	Z	15	22	anti-parallel
Strand 11	Z	25	31	anti-parallel
Strand 12	Z	2	7	anti-parallel
Strand 13	c	2	7	anti-parallel
Strand 14	c	25	32	anti-parallel
Strand 15	c	15	22	anti-parallel
Strand 16	d	20	22	anti-parallel
Strand 17	d	25	32	anti-parallel
Strand 18	d	2	7	anti-parallel
Strand 19	g	2	7	anti-parallel
Strand 20	g	25	32	anti-parallel
Strand 21	g	15	22	anti-parallel
Strand 22	h	15	22	anti-parallel
Strand 23	h	25	31	anti-parallel
Strand 24	h	2	7	anti-parallel
Strand 25	k	2	7	anti-parallel
Strand 26	k	25	32	anti-parallel
Strand 27	k	15	22	anti-parallel
Strand 28	l	15	22	anti-parallel
Strand 29	l	25	31	anti-parallel
Strand 30	l	2	7	anti-parallel
Strand 31	o	2	7	anti-parallel
Strand 32	o	25	31	anti-parallel
Strand 33	o	15	22	anti-parallel
Strand 34	p	15	22	anti-parallel
Strand 35	p	25	31	anti-parallel
Strand 36	p	2	7	anti-parallel
Strand 37	s	2	7	anti-parallel
Strand 38	s	25	32	anti-parallel
Strand 39	s	15	22	anti-parallel
Strand 40	t	15	22	anti-parallel
Strand 41	t	25	32	anti-parallel
Strand 42	t	3	7	anti-parallel

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There are 18 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	W	3	7	first strand
Strand 2	W	25	32	anti-parallel
Strand 3	W	15	22	anti-parallel
Strand 4	X	15	22	anti-parallel
Strand 5	X	25	31	anti-parallel
Strand 6	X	2	7	anti-parallel
Strand 7	a	2	7	anti-parallel
Strand 8	a	25	32	anti-parallel
Strand 9	a	15	22	anti-parallel
Strand 10	b	20	22	anti-parallel
Strand 11	b	25	32	anti-parallel
Strand 12	b	2	7	anti-parallel
Strand 13	e	2	7	anti-parallel
Strand 14	e	25	32	anti-parallel
Strand 15	e	15	22	anti-parallel
Strand 16	f	20	22	anti-parallel
Strand 17	f	25	32	anti-parallel
Strand 18	f	15	16	anti-parallel

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There are 15 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	15	16	first strand
Strand 2	b	25	32	anti-parallel
Strand 3	b	2	7	anti-parallel
Strand 4	e	2	7	anti-parallel
Strand 5	e	25	32	anti-parallel
Strand 6	e	15	22	anti-parallel
Strand 7	f	20	22	anti-parallel
Strand 8	f	25	32	anti-parallel
Strand 9	f	2	7	anti-parallel
Strand 10	i	2	7	anti-parallel
Strand 11	i	25	31	anti-parallel
Strand 12	i	15	22	anti-parallel
Strand 13	j	15	22	anti-parallel
Strand 14	j	25	32	anti-parallel
Strand 15	j	3	7	anti-parallel

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There are 17 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	m	4	7	first strand
Strand 2	m	25	31	anti-parallel
Strand 3	m	15	22	anti-parallel
Strand 4	n	15	22	anti-parallel
Strand 5	n	25	31	anti-parallel
Strand 6	n	2	7	anti-parallel
Strand 7	q	2	7	anti-parallel
Strand 8	q	25	31	anti-parallel
Strand 9	q	15	22	anti-parallel
Strand 10	r	15	22	anti-parallel
Strand 11	r	25	32	anti-parallel
Strand 12	r	2	7	anti-parallel
Strand 13	u	2	7	anti-parallel
Strand 14	u	25	32	anti-parallel
Strand 15	u	15	22	anti-parallel
Strand 16	v	20	22	anti-parallel
Strand 17	v	25	27	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	v	3	4	first strand
Strand 2	v	30	32	anti-parallel
Strand 3	v	15	16	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9R7M

Analysis of interatomic Contacts of Structural Units in PDB entry:
9R7M