Analysis of interatomic Contacts of Structural Units in PDB entry:
9R85


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9R85 entry

There are 2 chains in PDB entry 9R85 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 MET 1GLY 75
A
 LEU 10TRP 859
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 9R85. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
22 35Right-handed alpha
Helix 2
AA2
C
37 41Right-handed 310
Helix 3
AA3
C
55 60Right-handed alpha
Helix 4
AA4
A
11 33Right-handed alpha
Helix 5
AA5
A
37 42Right-handed 310
Helix 6
AA6
A
122 131Right-handed alpha
Helix 7
AA7
A
177 187Right-handed alpha
Helix 8
AA8
A
201 208Right-handed alpha
Helix 9
AA9
A
215 230Right-handed alpha
Helix 10
AB1
A
257 264Right-handed alpha
Helix 11
AB2
A
299 305Right-handed 310
Helix 12
AB3
A
358 360Right-handed 310
Helix 13
AB4
A
381 385Right-handed 310
Helix 14
AB5
A
388 397Right-handed 310
Helix 15
AB6
A
400 426Right-handed alpha
Helix 16
AB7
A
443 449Right-handed 310
Helix 17
AB8
A
451 463Right-handed alpha
Helix 18
AB9
A
477 487Right-handed alpha
Helix 19
AC1
A
497 506Right-handed alpha
Helix 20
AC2
A
543 556Right-handed alpha
Helix 21
AC3
A
572 578Right-handed alpha
Helix 22
AC4
A
594 611Right-handed alpha
Helix 23
AC5
A
620 629Right-handed alpha
Helix 24
AC6
A
637 641Right-handed 310
Helix 25
AC7
A
642 654Right-handed alpha
Helix 26
AC8
A
656 664Right-handed alpha
Helix 27
AC9
A
695 708Right-handed alpha
Helix 28
AD1
A
711 724Right-handed alpha
Helix 29
AD2
A
727 732Right-handed alpha
Helix 30
AD3
A
735 745Right-handed alpha
Helix 31
AD4
A
750 758Right-handed alpha
Helix 32
AD5
A
767 778Right-handed alpha
Helix 33
AD6
A
781 794Right-handed alpha
Helix 34
AD7
A
834 849Right-handed alpha
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There are 10 sheets in PDB entry 9R85. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 16first strand
Strand 2
C
2 7anti-parallel
Strand 3
C
66 69parallel
Strand 4
C
43 45anti-parallel
Strand 5
C
48 49anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
74 75first strand
Strand 2
A
819 821parallel
Strand 3
A
826 829anti-parallel
Strand 4
A
803 806parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 106first strand
Strand 2
A
47 50anti-parallel
Strand 3
A
153 154anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
94 98first strand
Strand 2
A
61 67anti-parallel
Strand 3
A
138 143anti-parallel
Strand 4
A
116 121anti-parallel
Strand 5
A
110 113anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 249first strand
Strand 2
A
279 285anti-parallel
Strand 3
A
348 356anti-parallel
Strand 4
A
307 316anti-parallel
Strand 5
A
319 327anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 271first strand
Strand 2
A
364 365anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
334 340first strand
Strand 2
A
291 298anti-parallel
Strand 3
A
368 372anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
473 476first strand
Strand 2
A
529 532parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
569 571first strand
Strand 2
A
586 588anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
671 673first strand
Strand 2
A
679 681anti-parallel
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