Analysis of interatomic Contacts of Structural Units in PDB entry:
9R8W

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9R8W entry

There are 8 chains in PDB entry 9R8W (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
Q	ASN 29	ILE 106
R	ASN 29	ILE 106
S	ASN 29	ILE 106
A	TRP 11	LEU 992
B	PRO 8	LEU 992
C	TRP 11	LEU 992
D	PRO 8	LEU 992
P	ASN 29	ILE 106

There are137 helices in PDB entry 9R8W. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	Q	44	56	Right-handed alpha
Helix 2	AA2	Q	82	93	Right-handed alpha
Helix 3	AA3	Q	95	100	Right-handed alpha
Helix 4	AA4	R	43	54	Right-handed alpha
Helix 5	AA5	R	82	93	Right-handed alpha
Helix 6	AA6	S	43	54	Right-handed alpha
Helix 7	AA7	S	82	93	Right-handed alpha
Helix 8	AA8	A	20	25	Right-handed alpha
Helix 9	AA9	A	27	40	Right-handed alpha
Helix 10	AB1	A	54	64	Right-handed alpha
Helix 11	AB2	A	76	79	Right-handed 310
Helix 12	AB3	A	80	96	Right-handed alpha
Helix 13	AB4	A	109	115	Right-handed alpha
Helix 14	AB5	A	119	129	Right-handed alpha
Helix 15	AB6	A	132	149	Right-handed alpha
Helix 16	AB7	A	159	177	Right-handed alpha
Helix 17	AB8	A	181	185	Right-handed 310
Helix 18	AB9	A	188	201	Right-handed alpha
Helix 19	AC1	A	219	232	Right-handed alpha
Helix 20	AC2	A	245	250	Right-handed alpha
Helix 21	AC3	A	254	271	Right-handed alpha
Helix 22	AC4	A	281	288	Right-handed alpha
Helix 23	AC5	A	301	309	Right-handed alpha
Helix 24	AC6	A	327	333	Right-handed alpha
Helix 25	AC7	A	345	358	Right-handed alpha
Helix 26	AC8	A	367	379	Right-handed alpha
Helix 27	AC9	A	381	392	Right-handed alpha
Helix 28	AD1	A	396	409	Right-handed alpha
Helix 29	AD2	A	414	425	Right-handed alpha
Helix 30	AD3	A	426	440	Right-handed alpha
Helix 31	AD4	A	444	452	Right-handed alpha
Helix 32	AD5	A	458	469	Right-handed alpha
Helix 33	AD6	A	485	499	Right-handed alpha
Helix 34	AD7	A	499	505	Right-handed alpha
Helix 35	AD8	A	509	520	Right-handed alpha
Helix 36	AD9	A	664	668	Right-handed 310
Helix 37	AE1	A	776	783	Right-handed alpha
Helix 38	AE2	A	841	851	Right-handed alpha
Helix 39	AE3	B	20	25	Right-handed alpha
Helix 40	AE4	B	27	40	Right-handed alpha
Helix 41	AE5	B	76	79	Right-handed 310
Helix 42	AE6	B	80	97	Right-handed alpha
Helix 43	AE7	B	109	115	Right-handed alpha
Helix 44	AE8	B	118	131	Right-handed alpha
Helix 45	AE9	B	132	149	Right-handed alpha
Helix 46	AF1	B	159	175	Right-handed alpha
Helix 47	AF2	B	188	201	Right-handed alpha
Helix 48	AF3	B	219	232	Right-handed alpha
Helix 49	AF4	B	245	251	Right-handed alpha
Helix 50	AF5	B	254	271	Right-handed alpha
Helix 51	AF6	B	281	287	Right-handed alpha
Helix 52	AF7	B	301	309	Right-handed alpha
Helix 53	AF8	B	326	333	Right-handed alpha
Helix 54	AF9	B	345	358	Right-handed alpha
Helix 55	AG1	B	364	366	Right-handed 310
Helix 56	AG2	B	367	379	Right-handed alpha
Helix 57	AG3	B	381	392	Right-handed alpha
Helix 58	AG4	B	396	409	Right-handed alpha
Helix 59	AG5	B	414	424	Right-handed alpha
Helix 60	AG6	B	426	439	Right-handed alpha
Helix 61	AG7	B	444	452	Right-handed alpha
Helix 62	AG8	B	458	469	Right-handed alpha
Helix 63	AG9	B	485	499	Right-handed alpha
Helix 64	AH1	B	499	504	Right-handed alpha
Helix 65	AH2	B	509	520	Right-handed alpha
Helix 66	AH3	B	542	549	Right-handed alpha
Helix 67	AH4	B	664	670	Right-handed alpha
Helix 68	AH5	B	776	783	Right-handed alpha
Helix 69	AH6	B	841	851	Right-handed alpha
Helix 70	AH7	B	929	934	Right-handed 310
Helix 71	AH8	C	20	25	Right-handed alpha
Helix 72	AH9	C	27	40	Right-handed alpha
Helix 73	AI1	C	55	65	Right-handed alpha
Helix 74	AI2	C	76	79	Right-handed 310
Helix 75	AI3	C	80	98	Right-handed alpha
Helix 76	AI4	C	109	115	Right-handed alpha
Helix 77	AI5	C	120	128	Right-handed alpha
Helix 78	AI6	C	132	149	Right-handed alpha
Helix 79	AI7	C	159	177	Right-handed alpha
Helix 80	AI8	C	188	201	Right-handed alpha
Helix 81	AI9	C	219	232	Right-handed alpha
Helix 82	AJ1	C	245	250	Right-handed alpha
Helix 83	AJ2	C	254	271	Right-handed alpha
Helix 84	AJ3	C	281	287	Right-handed alpha
Helix 85	AJ4	C	301	309	Right-handed alpha
Helix 86	AJ5	C	327	333	Right-handed alpha
Helix 87	AJ6	C	345	358	Right-handed alpha
Helix 88	AJ7	C	364	366	Right-handed 310
Helix 89	AJ8	C	367	379	Right-handed alpha
Helix 90	AJ9	C	381	392	Right-handed alpha
Helix 91	AK1	C	396	410	Right-handed alpha
Helix 92	AK2	C	414	424	Right-handed alpha
Helix 93	AK3	C	426	439	Right-handed alpha
Helix 94	AK4	C	444	453	Right-handed alpha
Helix 95	AK5	C	459	470	Right-handed alpha
Helix 96	AK6	C	485	499	Right-handed alpha
Helix 97	AK7	C	499	504	Right-handed alpha
Helix 98	AK8	C	509	520	Right-handed alpha
Helix 99	AK9	C	622	626	Right-handed 310
Helix 100	AL1	C	665	670	Right-handed alpha
Helix 101	AL2	C	747	751	Right-handed 310
Helix 102	AL3	C	776	783	Right-handed alpha
Helix 103	AL4	C	841	851	Right-handed alpha
Helix 104	AL5	D	20	25	Right-handed alpha
Helix 105	AL6	D	27	40	Right-handed alpha
Helix 106	AL7	D	57	62	Right-handed 310
Helix 107	AL8	D	76	79	Right-handed 310
Helix 108	AL9	D	80	97	Right-handed alpha
Helix 109	AM1	D	109	115	Right-handed alpha
Helix 110	AM2	D	118	129	Right-handed alpha
Helix 111	AM3	D	132	149	Right-handed alpha
Helix 112	AM4	D	159	175	Right-handed alpha
Helix 113	AM5	D	188	201	Right-handed alpha
Helix 114	AM6	D	219	232	Right-handed alpha
Helix 115	AM7	D	233	235	Right-handed 310
Helix 116	AM8	D	245	251	Right-handed alpha
Helix 117	AM9	D	254	271	Right-handed alpha
Helix 118	AN1	D	281	287	Right-handed alpha
Helix 119	AN2	D	301	309	Right-handed alpha
Helix 120	AN3	D	326	333	Right-handed alpha
Helix 121	AN4	D	345	358	Right-handed alpha
Helix 122	AN5	D	367	379	Right-handed alpha
Helix 123	AN6	D	381	392	Right-handed alpha
Helix 124	AN7	D	396	408	Right-handed alpha
Helix 125	AN8	D	414	424	Right-handed alpha
Helix 126	AN9	D	426	440	Right-handed alpha
Helix 127	AO1	D	444	452	Right-handed alpha
Helix 128	AO2	D	458	469	Right-handed alpha
Helix 129	AO3	D	485	499	Right-handed alpha
Helix 130	AO4	D	499	504	Right-handed alpha
Helix 131	AO5	D	509	519	Right-handed alpha
Helix 132	AO6	D	542	549	Right-handed alpha
Helix 133	AO7	D	665	670	Right-handed alpha
Helix 134	AO8	D	776	783	Right-handed alpha
Helix 135	AO9	D	841	851	Right-handed alpha
Helix 136	AP1	P	43	54	Right-handed alpha
Helix 137	AP2	P	82	93	Right-handed alpha

There are 37 sheets in PDB entry 9R8W. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	32	33	first strand
Strand 2	Q	78	79	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	Q	65	67	first strand
Strand 2	Q	73	75	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	77	79	first strand
Strand 2	R	32	35	anti-parallel
Strand 3	R	103	105	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	65	67	first strand
Strand 2	R	73	75	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	S	60	67	first strand
Strand 2	S	73	79	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	15	first strand
Strand 2	A	66	73	parallel
Strand 3	A	100	105	parallel
Strand 4	A	152	153	parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	237	241	first strand
Strand 2	A	292	299	parallel
Strand 3	A	319	324	parallel
Strand 4	A	208	213	parallel
Strand 5	A	337	340	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	472	475	first strand
Strand 2	A	481	484	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	506	507	first strand
Strand 2	A	528	532	parallel
Strand 3	A	554	558	parallel
Strand 4	A	583	586	parallel
Strand 5	A	605	606	parallel
Strand 6	A	628	630	parallel
Strand 7	A	651	653	parallel
Strand 8	A	675	677	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	719	720	first strand
Strand 2	A	742	743	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	799	800	first strand
Strand 2	A	820	821	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	856	859	first strand
Strand 2	A	948	951	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	19	first strand
Strand 2	B	68	72	parallel
Strand 3	B	100	104	parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	237	241	first strand
Strand 2	B	292	296	parallel
Strand 3	B	319	323	parallel
Strand 4	B	208	213	parallel
Strand 5	B	337	340	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	473	475	first strand
Strand 2	B	481	483	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	506	507	first strand
Strand 2	B	528	531	parallel
Strand 3	B	554	557	parallel
Strand 4	B	583	586	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	539	540	first strand
Strand 2	B	569	570	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	605	606	first strand
Strand 2	B	628	629	parallel
Strand 3	B	651	653	parallel
Strand 4	B	675	677	parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	719	721	first strand
Strand 2	B	742	744	parallel
Strand 3	B	765	766	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	872	874	first strand
Strand 2	B	986	988	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	16	first strand
Strand 2	C	66	69	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	71	73	first strand
Strand 2	C	103	105	parallel
Strand 3	C	152	153	parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	212	first strand
Strand 2	C	319	323	parallel
Strand 3	C	292	296	parallel
Strand 4	C	237	241	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	475	first strand
Strand 2	C	481	483	anti-parallel

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There are 8 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	506	507	first strand
Strand 2	C	528	532	parallel
Strand 3	C	554	558	parallel
Strand 4	C	583	586	parallel
Strand 5	C	605	606	parallel
Strand 6	C	628	629	parallel
Strand 7	C	651	652	parallel
Strand 8	C	675	676	parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	700	701	first strand
Strand 2	C	719	722	parallel
Strand 3	C	742	745	parallel
Strand 4	C	765	766	parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	879	880	first strand
Strand 2	C	971	974	anti-parallel
Strand 3	C	911	914	anti-parallel
Strand 4	C	924	925	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	946	950	first strand
Strand 2	C	889	894	anti-parallel
Strand 3	C	988	990	anti-parallel

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There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	237	241	first strand
Strand 2	D	292	299	parallel
Strand 3	D	319	324	parallel
Strand 4	D	208	213	parallel
Strand 5	D	338	340	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	474	475	first strand
Strand 2	D	481	482	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	506	507	first strand
Strand 2	D	528	532	parallel
Strand 3	D	554	558	parallel
Strand 4	D	583	586	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	539	540	first strand
Strand 2	D	569	570	parallel

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There are 6 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	605	606	first strand
Strand 2	D	628	630	parallel
Strand 3	D	651	653	parallel
Strand 4	D	675	677	parallel
Strand 5	D	698	700	parallel
Strand 6	D	719	721	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	742	744	first strand
Strand 2	D	764	766	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	858	860	first strand
Strand 2	D	947	949	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	871	873	first strand
Strand 2	D	987	989	anti-parallel
Strand 3	D	891	892	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	P	62	68	first strand
Strand 2	P	72	81	anti-parallel
Strand 3	P	30	37	anti-parallel
Strand 4	P	101	104	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9R8W

Analysis of interatomic Contacts of Structural Units in PDB entry:
9R8W