Analysis of interatomic Contacts of Structural Units in PDB entry:
9R96


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9R96 entry

There are 6 chains in PDB entry 9R96 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 122SER 1230
N
 T 3 T 52
T
 A 0 A 49
B
 PHE 71ARG 396
R
 G 102 G 102
C
 SER 43LEU 231
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 71 helices in PDB entry 9R96. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
122 146Right-handed alpha
Helix 2
AA2
A
168 182Right-handed alpha
Helix 3
AA3
A
186 198Right-handed alpha
Helix 4
AA4
A
220 237Right-handed alpha
Helix 5
AA5
A
238 252Right-handed alpha
Helix 6
AA6
A
252 257Right-handed alpha
Helix 7
AA7
A
260 274Right-handed alpha
Helix 8
AA8
A
277 290Right-handed alpha
Helix 9
AA9
A
295 310Right-handed alpha
Helix 10
AB1
A
312 327Right-handed alpha
Helix 11
AB2
A
329 334Right-handed alpha
Helix 12
AB3
A
340 355Right-handed alpha
Helix 13
AB4
A
392 410Right-handed alpha
Helix 14
AB5
A
424 462Right-handed alpha
Helix 15
AB6
A
467 473Right-handed alpha
Helix 16
AB7
A
475 489Right-handed alpha
Helix 17
AB8
A
497 521Right-handed alpha
Helix 18
AB9
A
521 534Right-handed alpha
Helix 19
AC1
A
548 556Right-handed alpha
Helix 20
AC2
A
568 587Right-handed alpha
Helix 21
AC3
A
624 635Right-handed alpha
Helix 22
AC4
A
644 646Right-handed 310
Helix 23
AC5
A
678 686Right-handed alpha
Helix 24
AC6
A
688 691Right-handed 310
Helix 25
AC7
A
692 704Right-handed alpha
Helix 26
AC8
A
710 723Right-handed alpha
Helix 27
AC9
A
756 789Right-handed alpha
Helix 28
AD1
A
818 824Right-handed alpha
Helix 29
AD2
A
837 850Right-handed alpha
Helix 30
AD3
A
856 867Right-handed alpha
Helix 31
AD4
A
867 877Right-handed alpha
Helix 32
AD5
A
883 888Right-handed 310
Helix 33
AD6
A
890 907Right-handed alpha
Helix 34
AD7
A
909 912Right-handed 310
Helix 35
AD8
A
925 936Right-handed alpha
Helix 36
AD9
A
937 944Right-handed alpha
Helix 37
AE1
A
954 973Right-handed alpha
Helix 38
AE2
A
975 981Right-handed alpha
Helix 39
AE3
A
990 997Right-handed alpha
Helix 40
AE4
A
1002 1016Right-handed alpha
Helix 41
AE5
A
1024 1040Right-handed alpha
Helix 42
AE6
A
1045 1064Right-handed alpha
Helix 43
AE7
A
1111 1141Right-handed alpha
Helix 44
AE8
A
1159 1176Right-handed alpha
Helix 45
AE9
A
1178 1192Right-handed alpha
Helix 46
AF1
A
1197 1209Right-handed alpha
Helix 47
AF2
A
1218 1225Right-handed 310
Helix 48
AF3
B
77 89Right-handed alpha
Helix 49
AF4
B
107 116Right-handed alpha
Helix 50
AF5
B
128 137Right-handed alpha
Helix 51
AF6
B
150 154Right-handed 310
Helix 52
AF7
B
168 176Right-handed alpha
Helix 53
AF8
B
199 213Right-handed alpha
Helix 54
AF9
B
215 221Right-handed 310
Helix 55
AG1
B
230 238Right-handed alpha
Helix 56
AG2
B
248 257Right-handed alpha
Helix 57
AG3
B
282 292Right-handed alpha
Helix 58
AG4
B
316 328Right-handed alpha
Helix 59
AG5
B
334 343Right-handed alpha
Helix 60
AG6
B
346 355Right-handed alpha
Helix 61
AG7
B
361 365Right-handed 310
Helix 62
AG8
B
366 380Right-handed alpha
Helix 63
AG9
B
390 394Right-handed 310
Helix 64
AH1
C
44 49Right-handed alpha
Helix 65
AH2
C
55 72Right-handed alpha
Helix 66
AH3
C
76 91Right-handed alpha
Helix 67
AH4
C
92 121Right-handed alpha
Helix 68
AH5
C
122 152Right-handed alpha
Helix 69
AH6
C
160 170Right-handed alpha
Helix 70
AH7
C
180 190Right-handed alpha
Helix 71
AH8
C
199 225Right-handed alpha
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There are 10 sheets in PDB entry 9R96. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
411 415first strand
Strand 2
A
638 642anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
495 496first strand
Strand 2
A
616 623anti-parallel
Strand 3
A
606 613anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
588 590first strand
Strand 2
A
602 604anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
707 709first strand
Strand 2
A
825 827anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
798 800first strand
Strand 2
A
806 808anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
831 832first strand
Strand 2
A
914 915anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
919 922first strand
Strand 2
A
1152 1155anti-parallel
Strand 3
A
1147 1149anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1069 1071first strand
Strand 2
A
1077 1079anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1089 1091first strand
Strand 2
A
1098 1100anti-parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
144 147first strand
Strand 2
B
119 123parallel
Strand 3
B
98 102parallel
Strand 4
B
190 194parallel
Strand 5
B
224 229parallel
Strand 6
B
295 303anti-parallel
Strand 7
B
258 267anti-parallel
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