Analysis of interatomic Contacts of Structural Units in PDB entry:
9R9A


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9R9A entry

There are 2 chains in PDB entry 9R9A (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLU 197ARG 858
C
 GLU 197ARG 858
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 9R9A. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
211 224Right-handed alpha
Helix 2
AA2
B
361 369Right-handed alpha
Helix 3
AA3
B
370 372Right-handed 310
Helix 4
AA4
B
378 389Right-handed alpha
Helix 5
AA5
B
392 400Right-handed alpha
Helix 6
AA6
B
400 405Right-handed alpha
Helix 7
AA7
B
490 503Right-handed alpha
Helix 8
AA8
B
518 525Right-handed alpha
Helix 9
AA9
B
527 540Right-handed alpha
Helix 10
AB1
B
545 555Right-handed alpha
Helix 11
AB2
B
573 577Right-handed 310
Helix 12
AB3
B
579 601Right-handed alpha
Helix 13
AB4
B
606 611Right-handed alpha
Helix 14
AB5
B
628 633Right-handed alpha
Helix 15
AB6
B
640 650Right-handed alpha
Helix 16
AB7
B
666 683Right-handed alpha
Helix 17
AB8
B
686 695Right-handed alpha
Helix 18
AB9
B
709 722Right-handed alpha
Helix 19
AC1
B
735 747Right-handed alpha
Helix 20
AC2
B
754 774Right-handed alpha
Helix 21
AC3
B
774 798Right-handed alpha
Helix 22
AC4
B
799 807Right-handed alpha
Helix 23
AC5
B
808 829Right-handed alpha
Helix 24
AC6
B
829 834Right-handed alpha
Helix 25
AC7
B
835 858Right-handed alpha
Helix 26
AC8
C
211 224Right-handed alpha
Helix 27
AC9
C
361 369Right-handed alpha
Helix 28
AD1
C
370 372Right-handed 310
Helix 29
AD2
C
378 389Right-handed alpha
Helix 30
AD3
C
392 400Right-handed alpha
Helix 31
AD4
C
400 405Right-handed alpha
Helix 32
AD5
C
490 503Right-handed alpha
Helix 33
AD6
C
518 525Right-handed alpha
Helix 34
AD7
C
527 540Right-handed alpha
Helix 35
AD8
C
545 555Right-handed alpha
Helix 36
AD9
C
573 577Right-handed 310
Helix 37
AE1
C
579 601Right-handed alpha
Helix 38
AE2
C
606 611Right-handed alpha
Helix 39
AE3
C
628 633Right-handed alpha
Helix 40
AE4
C
640 650Right-handed alpha
Helix 41
AE5
C
666 683Right-handed alpha
Helix 42
AE6
C
686 695Right-handed alpha
Helix 43
AE7
C
709 722Right-handed alpha
Helix 44
AE8
C
735 747Right-handed alpha
Helix 45
AE9
C
754 774Right-handed alpha
Helix 46
AF1
C
774 798Right-handed alpha
Helix 47
AF2
C
799 807Right-handed alpha
Helix 48
AF3
C
808 829Right-handed alpha
Helix 49
AF4
C
829 834Right-handed alpha
Helix 50
AF5
C
835 858Right-handed alpha
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There are 6 sheets in PDB entry 9R9A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
375 376first strand
Strand 2
B
206 209anti-parallel
Strand 3
B
406 408anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
420 421first strand
Strand 2
B
455 456parallel
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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
478 482first strand
Strand 2
B
464 475anti-parallel
Strand 3
B
506 512parallel
Strand 4
B
567 571parallel
Strand 5
B
621 627parallel
Strand 6
B
653 657parallel
Strand 7
B
697 702parallel
Strand 8
B
727 729parallel
Strand 9
B
441 445parallel
Strand 10
B
464 475parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
375 376first strand
Strand 2
C
206 209anti-parallel
Strand 3
C
406 408anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
420 421first strand
Strand 2
C
455 456parallel
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There are 10 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
478 482first strand
Strand 2
C
464 475anti-parallel
Strand 3
C
506 512parallel
Strand 4
C
567 571parallel
Strand 5
C
621 627parallel
Strand 6
C
653 657parallel
Strand 7
C
697 702parallel
Strand 8
C
727 729parallel
Strand 9
C
441 445parallel
Strand 10
C
464 475parallel
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