Analysis of interatomic Contacts of Structural Units in PDB entry:
9R9L

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9R9L entry

There are 3 chains in PDB entry 9R9L (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 7	GLY 637
B	ASN 7	GLY 637
C	ILE 6	GLY 637

There are 97 helices in PDB entry 9R9L. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	7	17	Right-handed alpha
Helix 2	AA2	A	23	47	Right-handed alpha
Helix 3	AA3	A	51	69	Right-handed alpha
Helix 4	AA4	A	71	81	Right-handed alpha
Helix 5	AA5	A	84	88	Right-handed 310
Helix 6	AA6	A	97	103	Right-handed alpha
Helix 7	AA7	A	104	111	Right-handed alpha
Helix 8	AA8	A	111	119	Right-handed alpha
Helix 9	AA9	A	154	168	Right-handed alpha
Helix 10	AB1	A	185	194	Right-handed alpha
Helix 11	AB2	A	195	200	Right-handed alpha
Helix 12	AB3	A	208	218	Right-handed alpha
Helix 13	AB4	A	255	272	Right-handed alpha
Helix 14	AB5	A	282	285	Right-handed 310
Helix 15	AB6	A	296	314	Right-handed alpha
Helix 16	AB7	A	326	334	Right-handed 310
Helix 17	AB8	A	336	340	Right-handed 310
Helix 18	AB9	A	349	363	Right-handed alpha
Helix 19	AC1	A	364	375	Right-handed alpha
Helix 20	AC2	A	399	405	Right-handed alpha
Helix 21	AC3	A	413	422	Right-handed alpha
Helix 22	AC4	A	448	453	Right-handed alpha
Helix 23	AC5	A	454	461	Right-handed alpha
Helix 24	AC6	A	463	484	Right-handed alpha
Helix 25	AC7	A	493	497	Right-handed 310
Helix 26	AC8	A	501	506	Right-handed 310
Helix 27	AC9	A	513	519	Right-handed 310
Helix 28	AD1	A	523	529	Right-handed alpha
Helix 29	AD2	A	530	532	Right-handed 310
Helix 30	AD3	A	535	554	Right-handed alpha
Helix 31	AD4	A	555	558	Right-handed 310
Helix 32	AD5	A	597	601	Right-handed alpha
Helix 33	AD6	B	8	17	Right-handed alpha
Helix 34	AD7	B	20	47	Right-handed alpha
Helix 35	AD8	B	51	70	Right-handed alpha
Helix 36	AD9	B	71	81	Right-handed alpha
Helix 37	AE1	B	84	88	Right-handed 310
Helix 38	AE2	B	97	102	Right-handed alpha
Helix 39	AE3	B	104	111	Right-handed alpha
Helix 40	AE4	B	111	119	Right-handed alpha
Helix 41	AE5	B	154	168	Right-handed alpha
Helix 42	AE6	B	185	193	Right-handed alpha
Helix 43	AE7	B	195	200	Right-handed alpha
Helix 44	AE8	B	208	215	Right-handed alpha
Helix 45	AE9	B	255	272	Right-handed alpha
Helix 46	AF1	B	282	285	Right-handed 310
Helix 47	AF2	B	296	313	Right-handed alpha
Helix 48	AF3	B	330	335	Right-handed 310
Helix 49	AF4	B	336	340	Right-handed 310
Helix 50	AF5	B	349	363	Right-handed alpha
Helix 51	AF6	B	365	375	Right-handed alpha
Helix 52	AF7	B	395	398	Right-handed 310
Helix 53	AF8	B	399	405	Right-handed alpha
Helix 54	AF9	B	413	422	Right-handed alpha
Helix 55	AG1	B	448	454	Right-handed alpha
Helix 56	AG2	B	454	462	Right-handed alpha
Helix 57	AG3	B	463	484	Right-handed alpha
Helix 58	AG4	B	493	497	Right-handed 310
Helix 59	AG5	B	501	505	Right-handed 310
Helix 60	AG6	B	513	518	Right-handed 310
Helix 61	AG7	B	523	529	Right-handed alpha
Helix 62	AG8	B	530	532	Right-handed 310
Helix 63	AG9	B	535	554	Right-handed alpha
Helix 64	AH1	B	555	558	Right-handed 310
Helix 65	AH2	B	597	601	Right-handed alpha
Helix 66	AH3	C	7	17	Right-handed alpha
Helix 67	AH4	C	20	47	Right-handed alpha
Helix 68	AH5	C	51	69	Right-handed alpha
Helix 69	AH6	C	71	81	Right-handed alpha
Helix 70	AH7	C	84	88	Right-handed 310
Helix 71	AH8	C	97	103	Right-handed alpha
Helix 72	AH9	C	104	111	Right-handed alpha
Helix 73	AI1	C	111	119	Right-handed alpha
Helix 74	AI2	C	154	167	Right-handed alpha
Helix 75	AI3	C	185	193	Right-handed alpha
Helix 76	AI4	C	195	200	Right-handed alpha
Helix 77	AI5	C	208	217	Right-handed alpha
Helix 78	AI6	C	255	272	Right-handed alpha
Helix 79	AI7	C	296	314	Right-handed alpha
Helix 80	AI8	C	330	335	Right-handed 310
Helix 81	AI9	C	336	340	Right-handed 310
Helix 82	AJ1	C	349	363	Right-handed alpha
Helix 83	AJ2	C	365	375	Right-handed alpha
Helix 84	AJ3	C	395	398	Right-handed 310
Helix 85	AJ4	C	399	404	Right-handed alpha
Helix 86	AJ5	C	413	423	Right-handed alpha
Helix 87	AJ6	C	448	453	Right-handed alpha
Helix 88	AJ7	C	454	462	Right-handed alpha
Helix 89	AJ8	C	463	484	Right-handed alpha
Helix 90	AJ9	C	493	497	Right-handed 310
Helix 91	AK1	C	502	507	Right-handed alpha
Helix 92	AK2	C	509	518	Right-handed 310
Helix 93	AK3	C	523	529	Right-handed alpha
Helix 94	AK4	C	530	532	Right-handed 310
Helix 95	AK5	C	535	553	Right-handed alpha
Helix 96	AK6	C	554	558	Right-handed 310
Helix 97	AK7	C	596	601	Right-handed alpha

There are 20 sheets in PDB entry 9R9L. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	96	first strand
Strand 2	A	122	125	parallel
Strand 3	A	171	176	parallel
Strand 4	A	276	280	parallel
Strand 5	A	318	322	parallel
Strand 6	A	346	348	parallel
Strand 7	A	383	387	parallel
Strand 8	A	486	491	parallel
Strand 9	A	93	96	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	129	131	first strand
Strand 2	A	142	148	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	180	182	first strand
Strand 2	A	248	250	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	204	205	first strand
Strand 2	A	238	241	anti-parallel
Strand 3	A	230	233	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	394	395	first strand
Strand 2	A	444	446	anti-parallel
Strand 3	A	433	435	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	563	564	first strand
Strand 2	A	573	578	anti-parallel
Strand 3	A	582	587	anti-parallel
Strand 4	A	631	635	anti-parallel
Strand 5	A	605	606	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	593	596	first strand
Strand 2	A	623	626	anti-parallel

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There are 9 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	96	first strand
Strand 2	B	122	125	parallel
Strand 3	B	171	176	parallel
Strand 4	B	276	280	parallel
Strand 5	B	318	322	parallel
Strand 6	B	346	348	parallel
Strand 7	B	383	387	parallel
Strand 8	B	487	491	parallel
Strand 9	B	93	96	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	180	181	first strand
Strand 2	B	249	250	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	204	205	first strand
Strand 2	B	238	241	anti-parallel
Strand 3	B	230	233	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	433	435	first strand
Strand 2	B	444	446	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	563	564	first strand
Strand 2	B	573	578	anti-parallel
Strand 3	B	582	587	anti-parallel
Strand 4	B	631	635	anti-parallel
Strand 5	B	605	607	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	593	596	first strand
Strand 2	B	623	626	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	96	first strand
Strand 2	C	122	125	parallel
Strand 3	C	171	174	parallel
Strand 4	C	276	280	parallel
Strand 5	C	318	322	parallel
Strand 6	C	346	348	parallel
Strand 7	C	383	387	parallel
Strand 8	C	487	491	parallel
Strand 9	C	93	96	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	129	131	first strand
Strand 2	C	142	148	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	180	182	first strand
Strand 2	C	248	250	anti-parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	204	205	first strand
Strand 2	C	238	241	anti-parallel
Strand 3	C	230	233	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	433	434	first strand
Strand 2	C	445	446	anti-parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	563	564	first strand
Strand 2	C	573	578	anti-parallel
Strand 3	C	582	587	anti-parallel
Strand 4	C	630	635	anti-parallel
Strand 5	C	605	606	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	593	595	first strand
Strand 2	C	624	626	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9R9L

Analysis of interatomic Contacts of Structural Units in PDB entry:
9R9L