Analysis of interatomic Contacts of Structural Units in PDB entry:
9RAD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9RAD entry

There are 4 chains in PDB entry 9RAD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 140ALA 596
E
 C 3 T 30
F
 A 31 G 58
B
 ALA 465GLN 503
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 9RAD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
140 163Right-handed alpha
Helix 2
AA2
A
211 226Right-handed alpha
Helix 3
AA3
A
243 255Right-handed alpha
Helix 4
AA4
A
258 263Right-handed alpha
Helix 5
AA5
A
273 283Right-handed alpha
Helix 6
AA6
A
284 288Right-handed 310
Helix 7
AA7
A
331 345Right-handed alpha
Helix 8
AA8
A
379 382Right-handed 310
Helix 9
AA9
A
409 426Right-handed alpha
Helix 10
AB1
A
430 448Right-handed alpha
Helix 11
AB2
A
450 481Right-handed alpha
Helix 12
AB3
A
484 516Right-handed alpha
Helix 13
AB4
A
522 527Right-handed alpha
Helix 14
AB5
A
541 545Right-handed 310
Helix 15
AB6
A
546 556Right-handed alpha
Helix 16
AB7
A
576 578Right-handed 310
Helix 17
AB8
B
466 480Right-handed alpha
Helix 18
AB9
B
485 502Right-handed alpha
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There are 3 sheets in PDB entry 9RAD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 186first strand
Strand 2
A
189 200anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 297first strand
Strand 2
A
303 312anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 408first strand
Strand 2
A
384 388anti-parallel
Strand 3
A
369 375anti-parallel
Strand 4
A
364 366anti-parallel
Strand 5
A
558 563parallel
Strand 6
A
580 584anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il