Analysis of interatomic Contacts of Structural Units in PDB entry:
9RAH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9RAH entry

There are 4 chains in PDB entry 9RAH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ALA 596
B
 MET 1THR 589
E
 C 3 G 57
F
 C 4 G 58
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 9RAH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
22 45Right-handed alpha
Helix 2
AA2
A
68 80Right-handed alpha
Helix 3
AA3
A
90 95Right-handed 310
Helix 4
AA4
A
99 101Right-handed 310
Helix 5
AA5
A
102 112Right-handed alpha
Helix 6
AA6
A
125 127Right-handed 310
Helix 7
AA7
A
128 140Right-handed alpha
Helix 8
AA8
A
148 163Right-handed alpha
Helix 9
AA9
A
211 226Right-handed alpha
Helix 10
AB1
A
243 254Right-handed alpha
Helix 11
AB2
A
258 263Right-handed alpha
Helix 12
AB3
A
273 282Right-handed alpha
Helix 13
AB4
A
283 288Right-handed 310
Helix 14
AB5
A
331 345Right-handed alpha
Helix 15
AB6
A
379 382Right-handed 310
Helix 16
AB7
A
409 426Right-handed alpha
Helix 17
AB8
A
430 448Right-handed alpha
Helix 18
AB9
A
450 481Right-handed alpha
Helix 19
AC1
A
484 516Right-handed alpha
Helix 20
AC2
A
522 527Right-handed alpha
Helix 21
AC3
A
541 545Right-handed 310
Helix 22
AC4
A
546 556Right-handed alpha
Helix 23
AC5
A
576 578Right-handed 310
Helix 24
AC6
B
22 45Right-handed alpha
Helix 25
AC7
B
68 80Right-handed alpha
Helix 26
AC8
B
90 95Right-handed 310
Helix 27
AC9
B
99 101Right-handed 310
Helix 28
AD1
B
102 112Right-handed alpha
Helix 29
AD2
B
125 127Right-handed 310
Helix 30
AD3
B
128 163Right-handed alpha
Helix 31
AD4
B
211 227Right-handed alpha
Helix 32
AD5
B
243 254Right-handed alpha
Helix 33
AD6
B
258 264Right-handed alpha
Helix 34
AD7
B
273 282Right-handed alpha
Helix 35
AD8
B
283 288Right-handed 310
Helix 36
AD9
B
331 344Right-handed alpha
Helix 37
AE1
B
408 426Right-handed alpha
Helix 38
AE2
B
430 449Right-handed alpha
Helix 39
AE3
B
450 481Right-handed alpha
Helix 40
AE4
B
484 514Right-handed alpha
Helix 41
AE5
B
522 527Right-handed alpha
Helix 42
AE6
B
540 545Right-handed alpha
Helix 43
AE7
B
546 557Right-handed alpha
Helix 44
AE8
B
575 579Right-handed alpha
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There are 9 sheets in PDB entry 9RAH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 55first strand
Strand 2
A
2 9parallel
Strand 3
A
85 88parallel
Strand 4
A
115 118parallel
Strand 5
A
122 124anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
175 186first strand
Strand 2
A
189 200anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
291 297first strand
Strand 2
A
303 312anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
407 408first strand
Strand 2
A
384 388anti-parallel
Strand 3
A
369 375anti-parallel
Strand 4
A
364 366anti-parallel
Strand 5
A
558 563parallel
Strand 6
A
580 584anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
48 55first strand
Strand 2
B
3 9parallel
Strand 3
B
85 88parallel
Strand 4
B
115 118parallel
Strand 5
B
122 124anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
175 186first strand
Strand 2
B
189 200anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
291 297first strand
Strand 2
B
303 312anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
364 366first strand
Strand 2
B
558 563parallel
Strand 3
B
580 584anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
372 375first strand
Strand 2
B
384 387anti-parallel
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