Analysis of interatomic Contacts of Structural Units in PDB entry:
9RBO

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RBO entry

There are 4 chains in PDB entry 9RBO (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASN 10	TYR 205
B	THR 328	PRO 643
C	TYR 664	LEU 712
D	VAL 740	ASN 1641

There are 29 helices in PDB entry 9RBO. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	459	465	Right-handed alpha
Helix 2	AA2	B	574	578	Right-handed 310
Helix 3	AA3	B	599	603	Right-handed 310
Helix 4	AA4	C	666	677	Right-handed alpha
Helix 5	AA5	C	695	712	Right-handed alpha
Helix 6	AA6	D	966	974	Right-handed alpha
Helix 7	AA7	D	977	982	Right-handed 310
Helix 8	AA8	D	990	995	Right-handed 310
Helix 9	AA9	D	996	1008	Right-handed alpha
Helix 10	AB1	D	1011	1016	Right-handed alpha
Helix 11	AB2	D	1017	1035	Right-handed alpha
Helix 12	AB3	D	1036	1038	Right-handed 310
Helix 13	AB4	D	1053	1067	Right-handed alpha
Helix 14	AB5	D	1074	1088	Right-handed alpha
Helix 15	AB6	D	1119	1132	Right-handed alpha
Helix 16	AB7	D	1142	1158	Right-handed alpha
Helix 17	AB8	D	1159	1161	Right-handed 310
Helix 18	AB9	D	1163	1178	Right-handed alpha
Helix 19	AC1	D	1182	1192	Right-handed alpha
Helix 20	AC2	D	1203	1221	Right-handed alpha
Helix 21	AC3	D	1226	1236	Right-handed alpha
Helix 22	AC4	D	1246	1263	Right-handed alpha
Helix 23	AC5	D	1392	1401	Right-handed alpha
Helix 24	AC6	D	1487	1494	Right-handed alpha
Helix 25	AC7	D	1506	1515	Right-handed alpha
Helix 26	AC8	D	1568	1573	Right-handed alpha
Helix 27	AC9	D	1587	1589	Right-handed 310
Helix 28	AD1	D	1611	1615	Right-handed 310
Helix 29	AD2	D	1623	1637	Right-handed alpha

There are 14 sheets in PDB entry 9RBO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	107	109	first strand
Strand 2	A	128	130	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	144	first strand
Strand 2	A	185	187	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	367	369	first strand
Strand 2	B	402	404	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	398	400	first strand
Strand 2	B	419	421	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	437	438	first strand
Strand 2	B	451	452	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	809	812	first strand
Strand 2	D	822	831	anti-parallel
Strand 3	D	870	879	anti-parallel
Strand 4	D	851	852	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	809	812	first strand
Strand 2	D	822	831	anti-parallel
Strand 3	D	1447	1448	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	816	818	first strand
Strand 2	D	906	910	parallel
Strand 3	D	884	887	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	862	866	first strand
Strand 2	D	838	844	anti-parallel
Strand 3	D	890	894	anti-parallel
Strand 4	D	901	903	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	914	921	first strand
Strand 2	D	1319	1328	anti-parallel
Strand 3	D	955	961	anti-parallel
Strand 4	D	1297	1302	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	937	940	first strand
Strand 2	D	1308	1311	anti-parallel
Strand 3	D	1275	1277	anti-parallel
Strand 4	D	1285	1286	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1339	1347	first strand
Strand 2	D	1360	1370	anti-parallel
Strand 3	D	1435	1443	anti-parallel
Strand 4	D	1389	1391	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1409	1410	first strand
Strand 2	D	1421	1426	anti-parallel
Strand 3	D	1379	1384	anti-parallel
Strand 4	D	1453	1459	anti-parallel
Strand 5	D	1466	1471	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1598	1599	first strand
Strand 2	D	1559	1565	parallel
Strand 3	D	1536	1548	anti-parallel
Strand 4	D	1519	1532	anti-parallel
Strand 5	D	1578	1585	anti-parallel
Strand 6	D	1605	1609	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RBO

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RBO