Analysis of interatomic Contacts of Structural Units in PDB entry:
9RBP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9RBP entry

There are 2 chains in PDB entry 9RBP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 10LYS 309
B
 LEU 11PHE 308
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 9RBP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 20Right-handed alpha
Helix 2
AA2
A
56 61Right-handed 310
Helix 3
AA3
A
63 68Right-handed alpha
Helix 4
AA4
A
93 108Right-handed alpha
Helix 5
AA5
A
120 133Right-handed alpha
Helix 6
AA6
A
157 168Right-handed alpha
Helix 7
AA7
A
171 177Right-handed alpha
Helix 8
AA8
A
180 185Right-handed alpha
Helix 9
AA9
A
185 190Right-handed alpha
Helix 10
AB1
A
196 205Right-handed alpha
Helix 11
AB2
A
206 208Right-handed 310
Helix 12
AB3
A
211 213Right-handed 310
Helix 13
AB4
A
214 224Right-handed alpha
Helix 14
AB5
A
231 247Right-handed alpha
Helix 15
AB6
A
263 274Right-handed alpha
Helix 16
AB7
A
287 291Right-handed 310
Helix 17
AB8
A
292 308Right-handed alpha
Helix 18
AB9
B
13 20Right-handed alpha
Helix 19
AC1
B
56 61Right-handed 310
Helix 20
AC2
B
63 69Right-handed 310
Helix 21
AC3
B
93 109Right-handed alpha
Helix 22
AC4
B
120 133Right-handed alpha
Helix 23
AC5
B
158 169Right-handed alpha
Helix 24
AC6
B
171 177Right-handed alpha
Helix 25
AC7
B
180 185Right-handed alpha
Helix 26
AC8
B
185 190Right-handed alpha
Helix 27
AC9
B
196 205Right-handed alpha
Helix 28
AD1
B
211 213Right-handed 310
Helix 29
AD2
B
214 223Right-handed alpha
Helix 30
AD3
B
231 247Right-handed alpha
Helix 31
AD4
B
263 274Right-handed alpha
Helix 32
AD5
B
287 291Right-handed 310
Helix 33
AD6
B
292 308Right-handed alpha
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There are 2 sheets in PDB entry 9RBP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
21 26first strand
Strand 2
A
29 35anti-parallel
Strand 3
A
71 76anti-parallel
Strand 4
A
45 50parallel
Strand 5
A
114 119parallel
Strand 6
A
137 143parallel
Strand 7
A
253 260parallel
Strand 8
A
277 284parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
21 26first strand
Strand 2
B
29 35anti-parallel
Strand 3
B
71 76anti-parallel
Strand 4
B
45 50parallel
Strand 5
B
114 119parallel
Strand 6
B
137 143parallel
Strand 7
B
253 259parallel
Strand 8
B
277 283parallel
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