Analysis of interatomic Contacts of Structural Units in PDB entry:
9RC1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9RC1 entry

There are 4 chains in PDB entry 9RC1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 20ARG 536
B
 THR 20ARG 536
C
 THR 20ARG 536
D
 THR 20ARG 536
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are115 helices in PDB entry 9RC1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 33Right-handed alpha
Helix 2
AA2
A
33 40Right-handed alpha
Helix 3
AA3
A
41 45Right-handed 310
Helix 4
AA4
A
52 57Right-handed alpha
Helix 5
AA5
A
70 80Right-handed alpha
Helix 6
AA6
A
111 115Right-handed alpha
Helix 7
AA7
A
122 126Right-handed 310
Helix 8
AA8
A
129 135Right-handed alpha
Helix 9
AA9
A
143 149Right-handed alpha
Helix 10
AB1
A
161 165Right-handed 310
Helix 11
AB2
A
170 180Right-handed alpha
Helix 12
AB3
A
192 194Right-handed 310
Helix 13
AB4
A
197 208Right-handed alpha
Helix 14
AB5
A
210 212Right-handed 310
Helix 15
AB6
A
220 224Right-handed 310
Helix 16
AB7
A
225 244Right-handed alpha
Helix 17
AB8
A
267 284Right-handed alpha
Helix 18
AB9
A
285 287Right-handed 310
Helix 19
AC1
A
288 318Right-handed alpha
Helix 20
AC2
A
323 346Right-handed alpha
Helix 21
AC3
A
349 353Right-handed 310
Helix 22
AC4
A
355 366Right-handed alpha
Helix 23
AC5
A
375 388Right-handed alpha
Helix 24
AC6
A
388 401Right-handed alpha
Helix 25
AC7
A
446 448Right-handed 310
Helix 26
AC8
A
449 460Right-handed alpha
Helix 27
AC9
A
469 478Right-handed alpha
Helix 28
AD1
A
482 494Right-handed alpha
Helix 29
AD2
A
502 519Right-handed alpha
Helix 30
AD3
B
21 33Right-handed alpha
Helix 31
AD4
B
33 40Right-handed alpha
Helix 32
AD5
B
41 45Right-handed 310
Helix 33
AD6
B
52 57Right-handed alpha
Helix 34
AD7
B
70 80Right-handed alpha
Helix 35
AD8
B
111 115Right-handed alpha
Helix 36
AD9
B
122 126Right-handed 310
Helix 37
AE1
B
129 134Right-handed alpha
Helix 38
AE2
B
143 149Right-handed alpha
Helix 39
AE3
B
161 165Right-handed 310
Helix 40
AE4
B
170 182Right-handed alpha
Helix 41
AE5
B
192 194Right-handed 310
Helix 42
AE6
B
197 207Right-handed alpha
Helix 43
AE7
B
210 212Right-handed 310
Helix 44
AE8
B
225 244Right-handed alpha
Helix 45
AE9
B
267 284Right-handed alpha
Helix 46
AF1
B
285 287Right-handed 310
Helix 47
AF2
B
288 318Right-handed alpha
Helix 48
AF3
B
323 347Right-handed alpha
Helix 49
AF4
B
349 353Right-handed 310
Helix 50
AF5
B
355 365Right-handed alpha
Helix 51
AF6
B
366 371Right-handed 310
Helix 52
AF7
B
375 388Right-handed alpha
Helix 53
AF8
B
388 404Right-handed alpha
Helix 54
AF9
B
444 448Right-handed 310
Helix 55
AG1
B
449 460Right-handed alpha
Helix 56
AG2
B
469 478Right-handed alpha
Helix 57
AG3
B
482 494Right-handed alpha
Helix 58
AG4
B
502 519Right-handed alpha
Helix 59
AG5
C
21 33Right-handed alpha
Helix 60
AG6
C
33 40Right-handed alpha
Helix 61
AG7
C
41 45Right-handed 310
Helix 62
AG8
C
52 57Right-handed alpha
Helix 63
AG9
C
70 80Right-handed alpha
Helix 64
AH1
C
111 115Right-handed alpha
Helix 65
AH2
C
122 126Right-handed 310
Helix 66
AH3
C
129 134Right-handed alpha
Helix 67
AH4
C
143 149Right-handed alpha
Helix 68
AH5
C
161 165Right-handed 310
Helix 69
AH6
C
170 182Right-handed alpha
Helix 70
AH7
C
197 207Right-handed alpha
Helix 71
AH8
C
210 212Right-handed 310
Helix 72
AH9
C
225 244Right-handed alpha
Helix 73
AI1
C
267 284Right-handed alpha
Helix 74
AI2
C
285 287Right-handed 310
Helix 75
AI3
C
288 318Right-handed alpha
Helix 76
AI4
C
323 347Right-handed alpha
Helix 77
AI5
C
349 353Right-handed 310
Helix 78
AI6
C
355 364Right-handed alpha
Helix 79
AI7
C
375 388Right-handed alpha
Helix 80
AI8
C
388 404Right-handed alpha
Helix 81
AI9
C
449 460Right-handed alpha
Helix 82
AJ1
C
469 477Right-handed alpha
Helix 83
AJ2
C
478 480Right-handed 310
Helix 84
AJ3
C
482 494Right-handed alpha
Helix 85
AJ4
C
502 519Right-handed alpha
Helix 86
AJ5
D
21 33Right-handed alpha
Helix 87
AJ6
D
33 40Right-handed alpha
Helix 88
AJ7
D
41 45Right-handed 310
Helix 89
AJ8
D
52 57Right-handed alpha
Helix 90
AJ9
D
70 80Right-handed alpha
Helix 91
AK1
D
111 115Right-handed alpha
Helix 92
AK2
D
122 126Right-handed 310
Helix 93
AK3
D
130 135Right-handed alpha
Helix 94
AK4
D
143 149Right-handed alpha
Helix 95
AK5
D
161 165Right-handed 310
Helix 96
AK6
D
170 182Right-handed alpha
Helix 97
AK7
D
192 194Right-handed 310
Helix 98
AK8
D
197 207Right-handed alpha
Helix 99
AK9
D
210 212Right-handed 310
Helix 100
AL1
D
225 244Right-handed alpha
Helix 101
AL2
D
267 284Right-handed alpha
Helix 102
AL3
D
285 287Right-handed 310
Helix 103
AL4
D
288 318Right-handed alpha
Helix 104
AL5
D
323 346Right-handed alpha
Helix 105
AL6
D
349 353Right-handed 310
Helix 106
AL7
D
355 366Right-handed alpha
Helix 107
AL8
D
375 388Right-handed alpha
Helix 108
AL9
D
388 404Right-handed alpha
Helix 109
AM1
D
444 448Right-handed 310
Helix 110
AM2
D
449 460Right-handed alpha
Helix 111
AM3
D
469 478Right-handed alpha
Helix 112
AM4
D
482 494Right-handed alpha
Helix 113
AM5
D
502 519Right-handed alpha
Helix 114
AM6
D
527 531Right-handed 310
Helix 115
AM7
D
532 536Right-handed 310
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There are 8 sheets in PDB entry 9RC1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 110first strand
Strand 2
A
136 141anti-parallel
Strand 3
A
97 102parallel
Strand 4
A
150 153anti-parallel
Strand 5
A
60 64parallel
Strand 6
A
184 190parallel
Strand 7
A
214 219parallel
Strand 8
A
252 254parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
467 468first strand
Strand 2
A
500 501anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 110first strand
Strand 2
B
136 141anti-parallel
Strand 3
B
97 102parallel
Strand 4
B
150 153anti-parallel
Strand 5
B
60 65parallel
Strand 6
B
184 190parallel
Strand 7
B
214 219parallel
Strand 8
B
252 254parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
467 468first strand
Strand 2
B
500 501anti-parallel
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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
107 110first strand
Strand 2
C
136 141anti-parallel
Strand 3
C
97 102parallel
Strand 4
C
150 153anti-parallel
Strand 5
C
60 65parallel
Strand 6
C
184 190parallel
Strand 7
C
214 219parallel
Strand 8
C
252 254parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
467 468first strand
Strand 2
C
500 501anti-parallel
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There are 8 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
107 110first strand
Strand 2
D
136 141anti-parallel
Strand 3
D
97 102parallel
Strand 4
D
150 153anti-parallel
Strand 5
D
60 65parallel
Strand 6
D
184 190parallel
Strand 7
D
214 219parallel
Strand 8
D
252 254parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
467 468first strand
Strand 2
D
500 501anti-parallel
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