Analysis of interatomic Contacts of Structural Units in PDB entry:
9RC3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9RC3 entry

There are 2 chains in PDB entry 9RC3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5PRO 464
B
 ASN 3PRO 464
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 13 helices in PDB entry 9RC3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 18Right-handed 310
Helix 2
AA2
A
153 161Right-handed alpha
Helix 3
AA3
A
170 175Right-handed alpha
Helix 4
AA4
A
197 201Right-handed 310
Helix 5
AA5
A
203 208Right-handed alpha
Helix 6
AA6
A
254 256Right-handed 310
Helix 7
AA7
A
447 453Right-handed alpha
Helix 8
AA8
B
10 18Right-handed 310
Helix 9
AA9
B
153 161Right-handed alpha
Helix 10
AB1
B
170 176Right-handed alpha
Helix 11
AB2
B
197 201Right-handed 310
Helix 12
AB3
B
350 354Right-handed 310
Helix 13
AB4
B
447 454Right-handed alpha
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There are 14 sheets in PDB entry 9RC3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 33first strand
Strand 2
A
226 230parallel
Strand 3
A
307 314parallel
Strand 4
A
299 304anti-parallel
Strand 5
A
248 252anti-parallel
Strand 6
A
277 279anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
49 61anti-parallel
Strand 3
A
69 74anti-parallel
Strand 4
A
79 80parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
44 45first strand
Strand 2
A
49 61anti-parallel
Strand 3
A
90 97parallel
Strand 4
A
130 136anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
83 86first strand
Strand 2
A
163 169parallel
Strand 3
A
142 147anti-parallel
Strand 4
A
106 108anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
217 220first strand
Strand 2
A
186 194anti-parallel
Strand 3
A
234 241parallel
Strand 4
A
284 290anti-parallel
Strand 5
A
258 262anti-parallel
Strand 6
A
267 274anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
355 356first strand
Strand 2
A
343 348anti-parallel
Strand 3
A
376 382parallel
Strand 4
A
428 433anti-parallel
Strand 5
A
401 405anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
368 371first strand
Strand 2
A
456 462parallel
Strand 3
A
439 445anti-parallel
Strand 4
A
391 395anti-parallel
Strand 5
A
420 423anti-parallel
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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
226 230parallel
Strand 3
B
307 314parallel
Strand 4
B
299 304anti-parallel
Strand 5
B
248 252anti-parallel
Strand 6
B
277 279anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
49 61anti-parallel
Strand 3
B
69 74anti-parallel
Strand 4
B
79 80parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
44 45first strand
Strand 2
B
49 61anti-parallel
Strand 3
B
90 98parallel
Strand 4
B
130 135anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
83 86first strand
Strand 2
B
163 169parallel
Strand 3
B
142 147anti-parallel
Strand 4
B
106 108anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
217 220first strand
Strand 2
B
186 194anti-parallel
Strand 3
B
234 241parallel
Strand 4
B
284 290anti-parallel
Strand 5
B
258 262anti-parallel
Strand 6
B
267 274anti-parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
355 356first strand
Strand 2
B
343 348anti-parallel
Strand 3
B
376 382parallel
Strand 4
B
428 433anti-parallel
Strand 5
B
401 405anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
368 371first strand
Strand 2
B
456 462parallel
Strand 3
B
439 445anti-parallel
Strand 4
B
391 395anti-parallel
Strand 5
B
420 423anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il