Analysis of interatomic Contacts of Structural Units in PDB entry:
9RCC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9RCC entry

There are 2 chains in PDB entry 9RCC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1HIS 496
B
 MET 1HIS 496
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 9RCC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 14Right-handed 310
Helix 2
AA2
A
44 49Right-handed alpha
Helix 3
AA3
A
60 77Right-handed alpha
Helix 4
AA4
A
122 135Right-handed alpha
Helix 5
AA5
A
139 156Right-handed alpha
Helix 6
AA6
A
191 195Right-handed 310
Helix 7
AA7
A
196 206Right-handed alpha
Helix 8
AA8
A
244 254Right-handed alpha
Helix 9
AA9
A
285 331Right-handed alpha
Helix 10
AB1
A
334 339Right-handed alpha
Helix 11
AB2
A
345 350Right-handed alpha
Helix 12
AB3
A
370 382Right-handed alpha
Helix 13
AB4
A
418 421Right-handed 310
Helix 14
AB5
A
475 496Right-handed alpha
Helix 15
AB6
B
44 50Right-handed alpha
Helix 16
AB7
B
60 77Right-handed alpha
Helix 17
AB8
B
119 121Right-handed 310
Helix 18
AB9
B
122 135Right-handed alpha
Helix 19
AC1
B
139 156Right-handed alpha
Helix 20
AC2
B
191 195Right-handed 310
Helix 21
AC3
B
196 206Right-handed alpha
Helix 22
AC4
B
244 255Right-handed alpha
Helix 23
AC5
B
285 332Right-handed alpha
Helix 24
AC6
B
334 341Right-handed alpha
Helix 25
AC7
B
345 350Right-handed alpha
Helix 26
AC8
B
370 382Right-handed alpha
Helix 27
AC9
B
418 421Right-handed 310
Helix 28
AD1
B
431 435Right-handed 310
Helix 29
AD2
B
455 468Right-handed alpha
Helix 30
AD3
B
475 496Right-handed alpha
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There are 9 sheets in PDB entry 9RCC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
22 23first strand
Strand 2
A
219 222anti-parallel
Strand 3
A
38 42anti-parallel
Strand 4
A
27 32anti-parallel
Strand 5
A
105 112anti-parallel
Strand 6
A
93 102anti-parallel
Strand 7
A
83 90anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
189 190first strand
Strand 2
A
171 178anti-parallel
Strand 3
A
159 165anti-parallel
Strand 4
A
269 278anti-parallel
Strand 5
A
258 266anti-parallel
Strand 6
A
208 211anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
362 366first strand
Strand 2
A
354 359anti-parallel
Strand 3
A
422 428anti-parallel
Strand 4
A
410 417anti-parallel
Strand 5
A
389 392anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 438first strand
Strand 2
A
462 467anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 448first strand
Strand 2
A
451 453anti-parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
22 23first strand
Strand 2
B
219 222anti-parallel
Strand 3
B
38 42anti-parallel
Strand 4
B
27 32anti-parallel
Strand 5
B
105 112anti-parallel
Strand 6
B
93 102anti-parallel
Strand 7
B
82 90anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
189 190first strand
Strand 2
B
171 178anti-parallel
Strand 3
B
159 165anti-parallel
Strand 4
B
269 278anti-parallel
Strand 5
B
258 266anti-parallel
Strand 6
B
208 211anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
225 226first strand
Strand 2
B
231 232anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
362 366first strand
Strand 2
B
354 359anti-parallel
Strand 3
B
422 428anti-parallel
Strand 4
B
410 417anti-parallel
Strand 5
B
389 392anti-parallel
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