Analysis of interatomic Contacts of Structural Units in PDB entry:
9RCV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RCV entry

There are 9 chains in PDB entry 9RCV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLY 17	ASP 745
B	GLY 1	PHE 407
C	GLY 1	TRP 274
D	ILE 1	MET 99
E	ARG 7	LEU 683
F	GLY 1	LEU 410
G	GLY 1	TRP 274
H	ILE 1	MET 99
I	LEU 80	ILE 150

There are 85 helices in PDB entry 9RCV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	17	48	Right-handed alpha
Helix 2	AA2	A	52	82	Right-handed alpha
Helix 3	AA3	A	87	94	Right-handed alpha
Helix 4	AA4	A	95	118	Right-handed alpha
Helix 5	AA5	A	129	135	Right-handed alpha
Helix 6	AA6	A	136	160	Right-handed alpha
Helix 7	AA7	A	172	178	Right-handed alpha
Helix 8	AA8	A	183	209	Right-handed alpha
Helix 9	AA9	A	210	214	Right-handed 310
Helix 10	AB1	A	223	270	Right-handed alpha
Helix 11	AB2	A	274	279	Right-handed alpha
Helix 12	AB3	A	280	290	Right-handed alpha
Helix 13	AB4	A	290	324	Right-handed alpha
Helix 14	AB5	A	324	334	Right-handed alpha
Helix 15	AB6	A	334	373	Right-handed alpha
Helix 16	AB7	A	373	380	Right-handed alpha
Helix 17	AB8	A	382	436	Right-handed alpha
Helix 18	AB9	A	440	484	Right-handed alpha
Helix 19	AC1	A	543	552	Right-handed alpha
Helix 20	AC2	A	570	572	Right-handed 310
Helix 21	AC3	A	573	580	Right-handed alpha
Helix 22	AC4	A	594	600	Right-handed alpha
Helix 23	AC5	A	608	619	Right-handed alpha
Helix 24	AC6	A	621	628	Right-handed alpha
Helix 25	AC7	A	630	634	Right-handed 310
Helix 26	AC8	A	646	658	Right-handed alpha
Helix 27	AC9	A	674	687	Right-handed alpha
Helix 28	AD1	A	688	694	Right-handed 310
Helix 29	AD2	A	702	709	Right-handed alpha
Helix 30	AD3	A	725	733	Right-handed alpha
Helix 31	AD4	A	734	742	Right-handed alpha
Helix 32	AD5	B	53	59	Right-handed alpha
Helix 33	AD6	B	84	90	Right-handed 310
Helix 34	AD7	B	389	407	Right-handed alpha
Helix 35	AD8	C	56	85	Right-handed alpha
Helix 36	AD9	C	137	151	Right-handed alpha
Helix 37	AE1	C	151	162	Right-handed alpha
Helix 38	AE2	C	162	175	Right-handed alpha
Helix 39	AE3	C	253	255	Right-handed 310
Helix 40	AE4	E	8	25	Right-handed alpha
Helix 41	AE5	E	25	31	Right-handed alpha
Helix 42	AE6	E	34	57	Right-handed alpha
Helix 43	AE7	E	62	64	Right-handed 310
Helix 44	AE8	E	65	84	Right-handed alpha
Helix 45	AE9	E	98	120	Right-handed alpha
Helix 46	AF1	E	132	146	Right-handed alpha
Helix 47	AF2	E	148	182	Right-handed alpha
Helix 48	AF3	E	185	234	Right-handed alpha
Helix 49	AF4	E	237	244	Right-handed alpha
Helix 50	AF5	E	245	261	Right-handed alpha
Helix 51	AF6	E	263	289	Right-handed alpha
Helix 52	AF7	E	289	296	Right-handed alpha
Helix 53	AF8	E	298	338	Right-handed alpha
Helix 54	AF9	E	338	344	Right-handed alpha
Helix 55	AG1	E	347	402	Right-handed alpha
Helix 56	AG2	E	405	440	Right-handed alpha
Helix 57	AG3	E	440	449	Right-handed alpha
Helix 58	AG4	E	508	517	Right-handed alpha
Helix 59	AG5	E	535	537	Right-handed 310
Helix 60	AG6	E	538	545	Right-handed alpha
Helix 61	AG7	E	559	565	Right-handed alpha
Helix 62	AG8	E	572	583	Right-handed alpha
Helix 63	AG9	E	585	590	Right-handed alpha
Helix 64	AH1	E	594	598	Right-handed 310
Helix 65	AH2	E	601	605	Right-handed 310
Helix 66	AH3	E	608	622	Right-handed alpha
Helix 67	AH4	E	638	645	Right-handed alpha
Helix 68	AH5	F	41	43	Right-handed 310
Helix 69	AH6	F	53	61	Right-handed alpha
Helix 70	AH7	F	84	88	Right-handed 310
Helix 71	AH8	F	96	100	Right-handed 310
Helix 72	AH9	F	127	132	Right-handed 310
Helix 73	AI1	F	242	246	Right-handed 310
Helix 74	AI2	F	352	356	Right-handed 310
Helix 75	AI3	F	389	410	Right-handed alpha
Helix 76	AI4	G	57	86	Right-handed alpha
Helix 77	AI5	G	137	151	Right-handed alpha
Helix 78	AI6	G	151	162	Right-handed alpha
Helix 79	AI7	G	162	175	Right-handed alpha
Helix 80	AI8	G	175	180	Right-handed alpha
Helix 81	AI9	I	81	85	Right-handed 310
Helix 82	AJ1	I	96	100	Right-handed 310
Helix 83	AJ2	I	110	115	Right-handed alpha
Helix 84	AJ3	I	116	125	Right-handed alpha
Helix 85	AJ4	I	125	150	Right-handed alpha

There are 29 sheets in PDB entry 9RCV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	521	528	first strand
Strand 2	A	503	510	anti-parallel
Strand 3	A	559	564	anti-parallel
Strand 4	A	567	568	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	581	584	first strand
Strand 2	A	663	667	parallel
Strand 3	A	695	699	parallel
Strand 4	A	533	537	parallel
Strand 5	A	711	716	parallel
Strand 6	A	719	724	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	230	238	anti-parallel
Strand 3	B	161	164	anti-parallel
Strand 4	B	133	143	anti-parallel
Strand 5	B	216	221	first strand

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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	156	158	first strand
Strand 2	B	230	238	anti-parallel
Strand 3	B	114	121	first strand
Strand 4	B	103	109	anti-parallel
Strand 5	B	70	76	anti-parallel
Strand 6	B	4	10	parallel
Strand 7	B	20	26	anti-parallel
Strand 8	B	45	49	parallel
Strand 9	B	133	143	parallel
Strand 10	B	216	221	first strand

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	151	first strand
Strand 2	B	258	269	parallel
Strand 3	B	247	255	anti-parallel
Strand 4	B	183	190	anti-parallel
Strand 5	B	193	200	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	277	first strand
Strand 2	B	293	300	anti-parallel
Strand 3	B	340	347	anti-parallel
Strand 4	B	326	329	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	277	first strand
Strand 2	B	293	300	anti-parallel
Strand 3	B	340	347	anti-parallel
Strand 4	B	333	334	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	321	322	first strand
Strand 2	B	307	313	anti-parallel
Strand 3	B	359	365	anti-parallel
Strand 4	B	374	377	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	47	first strand
Strand 2	C	32	37	anti-parallel
Strand 3	C	21	28	anti-parallel
Strand 4	C	3	12	anti-parallel
Strand 5	C	94	103	anti-parallel
Strand 6	C	109	118	anti-parallel
Strand 7	C	121	126	anti-parallel
Strand 8	C	133	134	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	195	first strand
Strand 2	C	198	208	anti-parallel
Strand 3	C	241	250	anti-parallel
Strand 4	C	228	230	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	186	195	first strand
Strand 2	C	198	208	anti-parallel
Strand 3	C	241	250	anti-parallel
Strand 4	C	234	235	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	222	223	first strand
Strand 2	C	214	219	anti-parallel
Strand 3	C	257	262	anti-parallel
Strand 4	C	270	272	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	11	first strand
Strand 2	D	21	30	anti-parallel
Strand 3	D	62	70	anti-parallel
Strand 4	D	50	51	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	6	11	first strand
Strand 2	D	21	30	anti-parallel
Strand 3	D	62	70	anti-parallel
Strand 4	D	55	56	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	45	first strand
Strand 2	D	35	41	anti-parallel
Strand 3	D	78	84	anti-parallel
Strand 4	D	91	94	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	486	493	first strand
Strand 2	E	468	475	anti-parallel
Strand 3	E	524	529	anti-parallel
Strand 4	E	532	533	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	546	549	first strand
Strand 2	E	627	631	parallel
Strand 3	E	655	660	parallel
Strand 4	E	498	502	parallel
Strand 5	E	671	676	parallel
Strand 6	E	679	681	anti-parallel

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There are 11 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	216	221	first strand
Strand 2	F	230	237	anti-parallel
Strand 3	F	161	164	anti-parallel
Strand 4	F	133	143	anti-parallel
Strand 5	F	114	121	anti-parallel
Strand 6	F	103	109	anti-parallel
Strand 7	F	70	76	anti-parallel
Strand 8	F	5	10	parallel
Strand 9	F	20	26	anti-parallel
Strand 10	F	45	49	parallel
Strand 11	F	133	143	parallel

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There are 5 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	149	151	first strand
Strand 2	F	258	269	parallel
Strand 3	F	247	255	anti-parallel
Strand 4	F	183	189	anti-parallel
Strand 5	F	194	200	anti-parallel

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There are 4 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	273	276	first strand
Strand 2	F	293	300	anti-parallel
Strand 3	F	340	347	anti-parallel
Strand 4	F	326	329	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	273	276	first strand
Strand 2	F	293	300	anti-parallel
Strand 3	F	340	347	anti-parallel
Strand 4	F	333	334	anti-parallel

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There are 4 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	321	322	first strand
Strand 2	F	307	313	anti-parallel
Strand 3	F	359	365	anti-parallel
Strand 4	F	374	379	anti-parallel

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There are 8 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	46	47	first strand
Strand 2	G	31	37	anti-parallel
Strand 3	G	21	28	anti-parallel
Strand 4	G	3	12	anti-parallel
Strand 5	G	94	103	anti-parallel
Strand 6	G	109	118	anti-parallel
Strand 7	G	121	126	anti-parallel
Strand 8	G	133	135	anti-parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	186	195	first strand
Strand 2	G	198	208	anti-parallel
Strand 3	G	241	250	anti-parallel
Strand 4	G	229	230	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	186	195	first strand
Strand 2	G	198	208	anti-parallel
Strand 3	G	241	250	anti-parallel
Strand 4	G	234	235	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	222	223	first strand
Strand 2	G	214	219	anti-parallel
Strand 3	G	257	262	anti-parallel
Strand 4	G	270	272	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	11	first strand
Strand 2	H	21	30	anti-parallel
Strand 3	H	62	70	anti-parallel
Strand 4	H	50	51	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	6	11	first strand
Strand 2	H	21	30	anti-parallel
Strand 3	H	62	70	anti-parallel
Strand 4	H	55	56	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	44	45	first strand
Strand 2	H	35	41	anti-parallel
Strand 3	H	78	84	anti-parallel
Strand 4	H	91	94	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RCV

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RCV