Analysis of interatomic Contacts of Structural Units in PDB entry:
9RD5


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9RD5 entry

There are 3 chains in PDB entry 9RD5 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 C 1 G 26
B
 C 1 G 26
H
 GLU 3GLU 319
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 19 helices in PDB entry 9RD5. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
H
6 15Right-handed alpha
Helix 2
AA2
H
19 41Right-handed alpha
Helix 3
AA3
H
43 47Right-handed 310
Helix 4
AA4
H
48 58Right-handed alpha
Helix 5
AA5
H
63 84Right-handed alpha
Helix 6
AA6
H
93 97Right-handed 310
Helix 7
AA7
H
98 106Right-handed 310
Helix 8
AA8
H
115 126Right-handed alpha
Helix 9
AA9
H
128 141Right-handed alpha
Helix 10
AB1
H
144 146Right-handed 310
Helix 11
AB2
H
147 153Right-handed alpha
Helix 12
AB3
H
154 158Right-handed 310
Helix 13
AB4
H
179 192Right-handed alpha
Helix 14
AB5
H
197 201Right-handed alpha
Helix 15
AB6
H
232 248Right-handed alpha
Helix 16
AB7
H
253 274Right-handed alpha
Helix 17
AB8
H
277 289Right-handed alpha
Helix 18
AB9
H
301 306Right-handed alpha
Helix 19
AC1
H
307 315Right-handed alpha
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There are 2 sheets in PDB entry 9RD5. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
163 168first strand
Strand 2
H
172 177anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
194 196first strand
Strand 2
H
208 210anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il