Analysis of interatomic Contacts of Structural Units in PDB entry:
9RD6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RD6 entry

There are 2 chains in PDB entry 9RD6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	HIS 169	GLU 652
B	HIS 169	VAL 653

There are 11 helices in PDB entry 9RD6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	242	251	Right-handed alpha
Helix 2	AA2	A	367	376	Right-handed alpha
Helix 3	AA3	A	488	498	Right-handed alpha
Helix 4	AA4	A	615	624	Right-handed alpha
Helix 5	AA5	B	242	251	Right-handed alpha
Helix 6	AA6	B	276	280	Right-handed 310
Helix 7	AA7	B	367	376	Right-handed alpha
Helix 8	AA8	B	488	498	Right-handed alpha
Helix 9	AA9	B	527	532	Right-handed 310
Helix 10	AB1	B	575	579	Right-handed 310
Helix 11	AB2	B	615	624	Right-handed alpha

There are 12 sheets in PDB entry 9RD6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	171	178	first strand
Strand 2	A	181	192	anti-parallel
Strand 3	A	195	203	anti-parallel
Strand 4	A	233	238	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	220	225	first strand
Strand 2	A	210	214	anti-parallel
Strand 3	A	255	259	anti-parallel
Strand 4	A	268	271	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	351	first strand
Strand 2	A	333	340	anti-parallel
Strand 3	A	380	384	anti-parallel
Strand 4	A	392	396	anti-parallel
Strand 5	A	283	289	anti-parallel
Strand 6	A	298	305	anti-parallel
Strand 7	A	312	319	anti-parallel
Strand 8	A	358	363	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	343	351	first strand
Strand 2	A	333	340	anti-parallel
Strand 3	A	380	384	anti-parallel
Strand 4	A	392	396	anti-parallel
Strand 5	A	283	289	anti-parallel
Strand 6	A	398	399	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	467	471	first strand
Strand 2	A	450	457	anti-parallel
Strand 3	A	501	507	anti-parallel
Strand 4	A	515	522	anti-parallel
Strand 5	A	405	410	anti-parallel
Strand 6	A	424	431	anti-parallel
Strand 7	A	437	444	anti-parallel
Strand 8	A	480	485	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	536	538	first strand
Strand 2	A	552	559	anti-parallel
Strand 3	A	565	572	anti-parallel
Strand 4	A	606	611	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	597	601	first strand
Strand 2	A	583	587	anti-parallel
Strand 3	A	627	632	anti-parallel
Strand 4	A	641	645	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	220	225	first strand
Strand 2	B	210	214	anti-parallel
Strand 3	B	255	259	anti-parallel
Strand 4	B	268	273	anti-parallel
Strand 5	B	171	177	anti-parallel
Strand 6	B	184	191	anti-parallel
Strand 7	B	196	203	anti-parallel
Strand 8	B	233	234	anti-parallel

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There are 8 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	343	351	first strand
Strand 2	B	333	340	anti-parallel
Strand 3	B	379	384	anti-parallel
Strand 4	B	392	399	anti-parallel
Strand 5	B	283	289	anti-parallel
Strand 6	B	298	305	anti-parallel
Strand 7	B	312	319	anti-parallel
Strand 8	B	358	363	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	467	471	first strand
Strand 2	B	450	457	anti-parallel
Strand 3	B	501	507	anti-parallel
Strand 4	B	515	522	anti-parallel
Strand 5	B	405	410	anti-parallel
Strand 6	B	424	431	anti-parallel
Strand 7	B	437	444	anti-parallel
Strand 8	B	480	485	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	536	538	first strand
Strand 2	B	552	559	anti-parallel
Strand 3	B	565	572	anti-parallel
Strand 4	B	606	611	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	597	601	first strand
Strand 2	B	583	587	anti-parallel
Strand 3	B	628	632	anti-parallel
Strand 4	B	641	644	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RD6

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RD6