Analysis of interatomic Contacts of Structural Units in PDB entry:
9RD8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9RD8 entry

There are 2 chains in PDB entry 9RD8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 8PRO 826
B
 GLU 4TRP 527
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 9RD8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
10 27Right-handed alpha
Helix 2
AA2
A
33 37Right-handed 310
Helix 3
AA3
A
43 47Right-handed 310
Helix 4
AA4
A
50 61Right-handed alpha
Helix 5
AA5
A
69 78Right-handed alpha
Helix 6
AA6
A
83 95Right-handed alpha
Helix 7
AA7
A
99 107Right-handed alpha
Helix 8
AA8
A
131 148Right-handed alpha
Helix 9
AA9
A
164 176Right-handed alpha
Helix 10
AB1
A
177 183Right-handed alpha
Helix 11
AB2
A
186 191Right-handed alpha
Helix 12
AB3
A
197 210Right-handed alpha
Helix 13
AB4
A
212 214Right-handed 310
Helix 14
AB5
A
215 226Right-handed alpha
Helix 15
AB6
A
227 245Right-handed alpha
Helix 16
AB7
A
249 269Right-handed alpha
Helix 17
AB8
A
270 283Right-handed alpha
Helix 18
AB9
A
305 327Right-handed alpha
Helix 19
AC1
A
355 367Right-handed alpha
Helix 20
AC2
A
412 435Right-handed alpha
Helix 21
AC3
A
438 447Right-handed alpha
Helix 22
AC4
A
449 459Right-handed alpha
Helix 23
AC5
A
474 479Right-handed alpha
Helix 24
AC6
A
494 510Right-handed alpha
Helix 25
AC7
A
533 537Right-handed 310
Helix 26
AC8
A
547 559Right-handed alpha
Helix 27
AC9
A
560 567Right-handed alpha
Helix 28
AD1
A
603 626Right-handed alpha
Helix 29
AD2
A
637 645Right-handed alpha
Helix 30
AD3
A
668 673Right-handed alpha
Helix 31
AD4
A
687 691Right-handed 310
Helix 32
AD5
A
696 701Right-handed alpha
Helix 33
AD6
A
702 721Right-handed alpha
Helix 34
AD7
A
729 731Right-handed 310
Helix 35
AD8
A
755 759Right-handed 310
Helix 36
AD9
A
779 790Right-handed alpha
Helix 37
AE1
A
790 799Right-handed alpha
Helix 38
AE2
B
7 23Right-handed alpha
Helix 39
AE3
B
31 63Right-handed alpha
Helix 40
AE4
B
78 82Right-handed 310
Helix 41
AE5
B
89 114Right-handed alpha
Helix 42
AE6
B
119 140Right-handed alpha
Helix 43
AE7
B
142 162Right-handed alpha
Helix 44
AE8
B
167 200Right-handed alpha
Helix 45
AE9
B
203 214Right-handed alpha
Helix 46
AF1
B
218 236Right-handed alpha
Helix 47
AF2
B
242 247Right-handed alpha
Helix 48
AF3
B
252 261Right-handed alpha
Helix 49
AF4
B
265 274Right-handed alpha
Helix 50
AF5
B
274 280Right-handed alpha
Helix 51
AF6
B
281 304Right-handed alpha
Helix 52
AF7
B
308 330Right-handed alpha
Helix 53
AF8
B
332 353Right-handed alpha
Helix 54
AF9
B
355 361Right-handed alpha
Helix 55
AG1
B
373 395Right-handed alpha
Helix 56
AG2
B
404 427Right-handed alpha
Helix 57
AG3
B
428 457Right-handed alpha
Helix 58
AG4
B
470 491Right-handed alpha
Helix 59
AG5
B
492 497Right-handed alpha
Helix 60
AG6
B
498 511Right-handed alpha
Helix 61
AG7
B
514 527Right-handed alpha
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There are 5 sheets in PDB entry 9RD8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
370 374first strand
Strand 2
A
346 350parallel
Strand 3
A
518 525parallel
Strand 4
A
579 586parallel
Strand 5
A
591 595anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
394 395first strand
Strand 2
A
383 386anti-parallel
Strand 3
A
405 410parallel
Strand 4
A
482 486anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
682 684first strand
Strand 2
A
663 666parallel
Strand 3
A
773 776parallel
Strand 4
A
803 807parallel
Strand 5
A
813 818anti-parallel
Strand 6
A
821 824anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
733 736first strand
Strand 2
A
741 744anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
68 70first strand
Strand 2
B
84 86anti-parallel
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