Analysis of interatomic Contacts of Structural Units in PDB entry:
9RDE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9RDE entry

There is 1 chain in PDB entry 9RDE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 4618GLN 5513
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 9RDE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4629 4639Right-handed alpha
Helix 2
AA2
A
4659 4674Right-handed alpha
Helix 3
AA3
A
4675 4677Right-handed 310
Helix 4
AA4
A
4712 4726Right-handed alpha
Helix 5
AA5
A
4756 4758Right-handed 310
Helix 6
AA6
A
4759 4779Right-handed alpha
Helix 7
AA7
A
4791 4804Right-handed alpha
Helix 8
AA8
A
4805 4810Right-handed alpha
Helix 9
AA9
A
4811 4821Right-handed alpha
Helix 10
AB1
A
4829 4833Right-handed 310
Helix 11
AB2
A
4848 4858Right-handed alpha
Helix 12
AB3
A
4866 4884Right-handed alpha
Helix 13
AB4
A
4928 4942Right-handed alpha
Helix 14
AB5
A
4943 4946Right-handed 310
Helix 15
AB6
A
4947 4956Right-handed alpha
Helix 16
AB7
A
4959 4964Right-handed alpha
Helix 17
AB8
A
5031 5055Right-handed alpha
Helix 18
AB9
A
5062 5067Right-handed 310
Helix 19
AC1
A
5072 5083Right-handed alpha
Helix 20
AC2
A
5095 5107Right-handed alpha
Helix 21
AC3
A
5127 5142Right-handed alpha
Helix 22
AC4
A
5143 5145Right-handed 310
Helix 23
AC5
A
5178 5197Right-handed alpha
Helix 24
AC6
A
5230 5250Right-handed alpha
Helix 25
AC7
A
5261 5272Right-handed alpha
Helix 26
AC8
A
5274 5285Right-handed alpha
Helix 27
AC9
A
5316 5330Right-handed alpha
Helix 28
AD1
A
5333 5349Right-handed alpha
Helix 29
AD2
A
5370 5374Right-handed 310
Helix 30
AD3
A
5397 5410Right-handed alpha
Helix 31
AD4
A
5415 5421Right-handed alpha
Helix 32
AD5
A
5425 5430Right-handed 310
Helix 33
AD6
A
5495 5508Right-handed alpha
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There are 6 sheets in PDB entry 9RDE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4624 4625first strand
Strand 2
A
4687 4692anti-parallel
Strand 3
A
4679 4684anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4647 4654first strand
Strand 2
A
4746 4754anti-parallel
Strand 3
A
4736 4743anti-parallel
Strand 4
A
4700 4706parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
4840 4846first strand
Strand 2
A
5019 5026anti-parallel
Strand 3
A
5008 5014anti-parallel
Strand 4
A
4970 4977parallel
Strand 5
A
4887 4894parallel
Strand 6
A
4915 4922anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5088 5093first strand
Strand 2
A
5158 5162anti-parallel
Strand 3
A
5147 5150anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5169 5172first strand
Strand 2
A
5206 5214parallel
Strand 3
A
5217 5225anti-parallel
Strand 4
A
5115 5124anti-parallel
Strand 5
A
5456 5460anti-parallel
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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
5309 5314first strand
Strand 2
A
5482 5487anti-parallel
Strand 3
A
5471 5476anti-parallel
Strand 4
A
5433 5436parallel
Strand 5
A
5356 5361parallel
Strand 6
A
5380 5385anti-parallel
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