Analysis of interatomic Contacts of Structural Units in PDB entry:
9RDG


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9RDG entry

There are 2 chains in PDB entry 9RDG (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA -2VAL 386
B
 ALA -2VAL 386
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 28 helices in PDB entry 9RDG. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 37Right-handed alpha
Helix 2
AA2
A
55 61Right-handed 310
Helix 3
AA3
A
62 72Right-handed alpha
Helix 4
AA4
A
84 86Right-handed 310
Helix 5
AA5
A
106 124Right-handed alpha
Helix 6
AA6
A
147 158Right-handed alpha
Helix 7
AA7
A
159 162Right-handed 310
Helix 8
AA8
A
175 178Right-handed 310
Helix 9
AA9
A
179 184Right-handed alpha
Helix 10
AB1
A
185 192Right-handed alpha
Helix 11
AB2
A
203 207Right-handed 310
Helix 12
AB3
A
209 216Right-handed alpha
Helix 13
AB4
A
242 255Right-handed alpha
Helix 14
AB5
A
280 291Right-handed alpha
Helix 15
AB6
B
28 37Right-handed alpha
Helix 16
AB7
B
55 61Right-handed 310
Helix 17
AB8
B
62 72Right-handed alpha
Helix 18
AB9
B
84 86Right-handed 310
Helix 19
AC1
B
106 124Right-handed alpha
Helix 20
AC2
B
147 158Right-handed alpha
Helix 21
AC3
B
159 162Right-handed 310
Helix 22
AC4
B
175 178Right-handed 310
Helix 23
AC5
B
179 185Right-handed alpha
Helix 24
AC6
B
185 192Right-handed alpha
Helix 25
AC7
B
203 207Right-handed 310
Helix 26
AC8
B
209 216Right-handed alpha
Helix 27
AC9
B
242 255Right-handed alpha
Helix 28
AD1
B
280 291Right-handed alpha
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There are 8 sheets in PDB entry 9RDG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 362first strand
Strand 2
A
348 354anti-parallel
Strand 3
A
366 367anti-parallel
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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
361 362first strand
Strand 2
A
348 354anti-parallel
Strand 3
A
381 386anti-parallel
Strand 4
A
323 329anti-parallel
Strand 5
A
310 316anti-parallel
Strand 6
A
298 302anti-parallel
Strand 7
A
-1 11anti-parallel
Strand 8
A
335 340parallel
Strand 9
A
372 377anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
14 18first strand
Strand 2
A
47 52parallel
Strand 3
A
75 80parallel
Strand 4
A
130 132parallel
Strand 5
A
166 171parallel
Strand 6
A
194 198parallel
Strand 7
A
220 225parallel
Strand 8
A
260 265parallel
Strand 9
A
14 18parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 93first strand
Strand 2
A
96 102anti-parallel
Strand 3
A
144 145parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
361 362first strand
Strand 2
B
348 354anti-parallel
Strand 3
B
366 367anti-parallel
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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
361 362first strand
Strand 2
B
348 354anti-parallel
Strand 3
B
381 386anti-parallel
Strand 4
B
323 329anti-parallel
Strand 5
B
310 316anti-parallel
Strand 6
B
298 302anti-parallel
Strand 7
B
-1 11anti-parallel
Strand 8
B
335 340parallel
Strand 9
B
372 377anti-parallel
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There are 9 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 18first strand
Strand 2
B
47 52parallel
Strand 3
B
75 80parallel
Strand 4
B
130 132parallel
Strand 5
B
166 171parallel
Strand 6
B
194 198parallel
Strand 7
B
220 225parallel
Strand 8
B
260 265parallel
Strand 9
B
14 18parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
88 93first strand
Strand 2
B
96 102anti-parallel
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