Analysis of interatomic Contacts of Structural Units in PDB entry:
9RDT

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RDT entry

There are 3 chains in PDB entry 9RDT (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	ASP 17	LEU 1128
B	ASP 17	LEU 1128
A	ASP 17	LEU 1128

There are 78 helices in PDB entry 9RDT. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	285	295	Right-handed alpha
Helix 2	AA2	C	328	334	Right-handed alpha
Helix 3	AA3	C	340	344	Right-handed 310
Helix 4	AA4	C	355	361	Right-handed 310
Helix 5	AA5	C	375	379	Right-handed 310
Helix 6	AA6	C	395	403	Right-handed 310
Helix 7	AA7	C	408	414	Right-handed alpha
Helix 8	AA8	C	490	494	Right-handed 310
Helix 9	AA9	C	604	607	Right-handed 310
Helix 10	AB1	C	608	613	Right-handed alpha
Helix 11	AB2	C	614	617	Right-handed 310
Helix 12	AB3	C	618	624	Right-handed alpha
Helix 13	AB4	C	720	725	Right-handed alpha
Helix 14	AB5	C	729	740	Right-handed alpha
Helix 15	AB6	C	743	766	Right-handed alpha
Helix 16	AB7	C	799	809	Right-handed alpha
Helix 17	AB8	C	831	838	Right-handed alpha
Helix 18	AB9	C	849	868	Right-handed alpha
Helix 19	AC1	C	869	873	Right-handed 310
Helix 20	AC2	C	880	892	Right-handed alpha
Helix 21	AC3	C	896	902	Right-handed alpha
Helix 22	AC4	C	902	924	Right-handed alpha
Helix 23	AC5	C	929	948	Right-handed alpha
Helix 24	AC6	C	949	951	Right-handed 310
Helix 25	AC7	C	960	967	Right-handed alpha
Helix 26	AC8	C	968	1016	Right-handed alpha
Helix 27	AC9	B	285	295	Right-handed alpha
Helix 28	AD1	B	328	334	Right-handed alpha
Helix 29	AD2	B	340	344	Right-handed 310
Helix 30	AD3	B	355	361	Right-handed 310
Helix 31	AD4	B	375	379	Right-handed 310
Helix 32	AD5	B	395	403	Right-handed 310
Helix 33	AD6	B	408	414	Right-handed alpha
Helix 34	AD7	B	490	494	Right-handed 310
Helix 35	AD8	B	604	607	Right-handed 310
Helix 36	AD9	B	608	613	Right-handed alpha
Helix 37	AE1	B	614	617	Right-handed 310
Helix 38	AE2	B	618	624	Right-handed alpha
Helix 39	AE3	B	720	725	Right-handed alpha
Helix 40	AE4	B	729	740	Right-handed alpha
Helix 41	AE5	B	743	766	Right-handed alpha
Helix 42	AE6	B	799	809	Right-handed alpha
Helix 43	AE7	B	831	838	Right-handed alpha
Helix 44	AE8	B	849	868	Right-handed alpha
Helix 45	AE9	B	869	873	Right-handed 310
Helix 46	AF1	B	880	892	Right-handed alpha
Helix 47	AF2	B	896	902	Right-handed alpha
Helix 48	AF3	B	902	924	Right-handed alpha
Helix 49	AF4	B	929	948	Right-handed alpha
Helix 50	AF5	B	949	951	Right-handed 310
Helix 51	AF6	B	960	967	Right-handed alpha
Helix 52	AF7	B	968	1016	Right-handed alpha
Helix 53	AF8	A	285	295	Right-handed alpha
Helix 54	AF9	A	328	334	Right-handed alpha
Helix 55	AG1	A	340	344	Right-handed 310
Helix 56	AG2	A	355	361	Right-handed 310
Helix 57	AG3	A	375	379	Right-handed 310
Helix 58	AG4	A	395	403	Right-handed 310
Helix 59	AG5	A	408	414	Right-handed alpha
Helix 60	AG6	A	490	494	Right-handed 310
Helix 61	AG7	A	604	607	Right-handed 310
Helix 62	AG8	A	608	613	Right-handed alpha
Helix 63	AG9	A	614	617	Right-handed 310
Helix 64	AH1	A	618	624	Right-handed alpha
Helix 65	AH2	A	720	725	Right-handed alpha
Helix 66	AH3	A	729	740	Right-handed alpha
Helix 67	AH4	A	743	766	Right-handed alpha
Helix 68	AH5	A	799	809	Right-handed alpha
Helix 69	AH6	A	831	838	Right-handed alpha
Helix 70	AH7	A	849	868	Right-handed alpha
Helix 71	AH8	A	869	873	Right-handed 310
Helix 72	AH9	A	880	892	Right-handed alpha
Helix 73	AI1	A	896	902	Right-handed alpha
Helix 74	AI2	A	902	924	Right-handed alpha
Helix 75	AI3	A	929	948	Right-handed alpha
Helix 76	AI4	A	949	951	Right-handed 310
Helix 77	AI5	A	960	967	Right-handed alpha
Helix 78	AI6	A	968	1016	Right-handed alpha

There are 51 sheets in PDB entry 9RDT. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	31	33	first strand
Strand 2	C	66	69	anti-parallel
Strand 3	C	255	260	anti-parallel
Strand 4	C	92	98	anti-parallel
Strand 5	C	184	193	anti-parallel
Strand 6	C	196	204	anti-parallel
Strand 7	C	216	226	anti-parallel
Strand 8	C	37	41	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	51	59	first strand
Strand 2	C	262	270	anti-parallel
Strand 3	C	276	281	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	86	87	first strand
Strand 2	C	233	238	anti-parallel
Strand 3	C	103	109	anti-parallel
Strand 4	C	118	122	anti-parallel
Strand 5	C	129	133	anti-parallel
Strand 6	C	165	166	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	149	150	first strand
Strand 2	C	145	146	anti-parallel
Strand 3	C	241	242	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	302	305	first strand
Strand 2	C	582	587	anti-parallel
Strand 3	C	597	601	anti-parallel
Strand 4	C	638	641	anti-parallel
Strand 5	C	632	634	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	345	349	first strand
Strand 2	C	387	394	anti-parallel
Strand 3	C	496	502	anti-parallel
Strand 4	C	423	429	anti-parallel
Strand 5	C	368	372	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	353	first strand
Strand 2	C	512	513	parallel
Strand 3	C	383	384	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	440	442	first strand
Strand 2	C	479	481	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	526	530	first strand
Strand 2	C	535	539	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	553	554	first strand
Strand 2	C	563	565	anti-parallel
Strand 3	C	572	574	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	643	645	first strand
Strand 2	C	675	679	parallel
Strand 3	C	660	664	anti-parallel
Strand 4	C	654	657	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	685	686	first strand
Strand 2	B	771	772	parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	694	711	first strand
Strand 2	C	1042	1059	anti-parallel
Strand 3	C	1030	1039	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	719	first strand
Strand 2	C	841	844	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	771	772	first strand
Strand 2	A	685	686	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	779	780	first strand
Strand 2	C	783	784	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1103	1105	first strand
Strand 2	C	1070	1073	anti-parallel
Strand 3	C	1064	1065	anti-parallel
Strand 4	C	1116	1117	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1077	1079	first strand
Strand 2	C	1086	1088	anti-parallel

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There are 8 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	31	33	first strand
Strand 2	B	66	69	anti-parallel
Strand 3	B	255	260	anti-parallel
Strand 4	B	92	98	anti-parallel
Strand 5	B	184	193	anti-parallel
Strand 6	B	196	204	anti-parallel
Strand 7	B	216	226	anti-parallel
Strand 8	B	37	41	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	59	first strand
Strand 2	B	262	270	anti-parallel
Strand 3	B	276	281	anti-parallel

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There are 6 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	87	first strand
Strand 2	B	233	238	anti-parallel
Strand 3	B	103	109	anti-parallel
Strand 4	B	118	122	anti-parallel
Strand 5	B	129	133	anti-parallel
Strand 6	B	165	166	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	149	150	first strand
Strand 2	B	145	146	anti-parallel
Strand 3	B	241	242	parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	302	305	first strand
Strand 2	B	582	587	anti-parallel
Strand 3	B	597	601	anti-parallel
Strand 4	B	638	641	anti-parallel
Strand 5	B	632	634	anti-parallel

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There are 5 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	345	349	first strand
Strand 2	B	387	394	anti-parallel
Strand 3	B	496	502	anti-parallel
Strand 4	B	423	429	anti-parallel
Strand 5	B	368	372	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	353	first strand
Strand 2	B	512	513	parallel
Strand 3	B	383	384	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	440	442	first strand
Strand 2	B	479	481	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	526	530	first strand
Strand 2	B	535	539	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	553	554	first strand
Strand 2	B	563	565	anti-parallel
Strand 3	B	572	574	anti-parallel

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There are 4 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	643	645	first strand
Strand 2	B	675	679	parallel
Strand 3	B	660	664	anti-parallel
Strand 4	B	654	657	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	685	686	first strand
Strand 2	A	771	772	parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	694	711	first strand
Strand 2	B	1042	1059	anti-parallel
Strand 3	B	1030	1039	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	716	719	first strand
Strand 2	B	841	844	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	779	780	first strand
Strand 2	B	783	784	anti-parallel

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There are 4 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1103	1105	first strand
Strand 2	B	1070	1073	anti-parallel
Strand 3	B	1064	1065	anti-parallel
Strand 4	B	1116	1117	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1077	1079	first strand
Strand 2	B	1086	1088	anti-parallel

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There are 8 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	31	33	first strand
Strand 2	A	66	69	anti-parallel
Strand 3	A	255	260	anti-parallel
Strand 4	A	92	98	anti-parallel
Strand 5	A	184	193	anti-parallel
Strand 6	A	196	204	anti-parallel
Strand 7	A	216	226	anti-parallel
Strand 8	A	37	41	parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	59	first strand
Strand 2	A	262	270	anti-parallel
Strand 3	A	276	281	anti-parallel

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There are 6 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	87	first strand
Strand 2	A	233	238	anti-parallel
Strand 3	A	103	109	anti-parallel
Strand 4	A	118	122	anti-parallel
Strand 5	A	129	133	anti-parallel
Strand 6	A	165	166	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	150	first strand
Strand 2	A	145	146	anti-parallel
Strand 3	A	241	242	parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	302	305	first strand
Strand 2	A	582	587	anti-parallel
Strand 3	A	597	601	anti-parallel
Strand 4	A	638	641	anti-parallel
Strand 5	A	632	634	anti-parallel

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There are 5 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	345	349	first strand
Strand 2	A	387	394	anti-parallel
Strand 3	A	496	502	anti-parallel
Strand 4	A	423	429	anti-parallel
Strand 5	A	368	372	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	353	first strand
Strand 2	A	512	513	parallel
Strand 3	A	383	384	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	440	442	first strand
Strand 2	A	479	481	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	530	first strand
Strand 2	A	535	539	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	553	554	first strand
Strand 2	A	563	565	anti-parallel
Strand 3	A	572	574	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	643	645	first strand
Strand 2	A	675	679	parallel
Strand 3	A	660	664	anti-parallel
Strand 4	A	654	657	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	694	711	first strand
Strand 2	A	1042	1059	anti-parallel
Strand 3	A	1030	1039	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	716	719	first strand
Strand 2	A	841	844	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	779	780	first strand
Strand 2	A	783	784	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1103	1105	first strand
Strand 2	A	1070	1073	anti-parallel
Strand 3	A	1064	1065	anti-parallel
Strand 4	A	1116	1117	parallel

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There are 2 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1077	1079	first strand
Strand 2	A	1086	1088	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RDT

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RDT