Analysis of interatomic Contacts of Structural Units in PDB entry:
9RF3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9RF3 entry

There is 1 chain in PDB entry 9RF3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 12ASN 1641
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 9RF3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
668 676Right-handed alpha
Helix 2
AA2
A
966 974Right-handed alpha
Helix 3
AA3
A
977 981Right-handed 310
Helix 4
AA4
A
991 995Right-handed 310
Helix 5
AA5
A
996 1009Right-handed alpha
Helix 6
AA6
A
1015 1030Right-handed alpha
Helix 7
AA7
A
1030 1037Right-handed alpha
Helix 8
AA8
A
1053 1064Right-handed alpha
Helix 9
AA9
A
1065 1067Right-handed 310
Helix 10
AB1
A
1077 1085Right-handed alpha
Helix 11
AB2
A
1117 1132Right-handed alpha
Helix 12
AB3
A
1142 1157Right-handed alpha
Helix 13
AB4
A
1164 1175Right-handed alpha
Helix 14
AB5
A
1182 1190Right-handed alpha
Helix 15
AB6
A
1192 1196Right-handed 310
Helix 16
AB7
A
1203 1221Right-handed alpha
Helix 17
AB8
A
1227 1235Right-handed alpha
Helix 18
AB9
A
1247 1264Right-handed alpha
Helix 19
AC1
A
1392 1401Right-handed alpha
Helix 20
AC2
A
1490 1494Right-handed 310
Helix 21
AC3
A
1506 1513Right-handed alpha
Helix 22
AC4
A
1567 1569Right-handed 310
Helix 23
AC5
A
1585 1589Right-handed 310
Helix 24
AC6
A
1623 1637Right-handed alpha
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There are 9 sheets in PDB entry 9RF3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
811 812first strand
Strand 2
A
823 827anti-parallel
Strand 3
A
876 878anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
829 830first strand
Strand 2
A
871 872anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
861 864first strand
Strand 2
A
840 844anti-parallel
Strand 3
A
885 893anti-parallel
Strand 4
A
901 908anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
915 919first strand
Strand 2
A
1319 1327anti-parallel
Strand 3
A
955 961anti-parallel
Strand 4
A
1297 1298anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1038 1039first strand
Strand 2
A
1043 1044anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1285 1286first strand
Strand 2
A
1275 1277anti-parallel
Strand 3
A
1309 1311anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1339 1343first strand
Strand 2
A
1360 1370anti-parallel
Strand 3
A
1435 1443anti-parallel
Strand 4
A
1389 1391anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1421 1425first strand
Strand 2
A
1379 1384anti-parallel
Strand 3
A
1455 1459anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1579 1584first strand
Strand 2
A
1521 1531anti-parallel
Strand 3
A
1536 1546anti-parallel
Strand 4
A
1562 1565anti-parallel
Strand 5
A
1598 1599parallel
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