Analysis of interatomic Contacts of Structural Units in PDB entry:
9RFS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9RFS entry

There are 2 chains in PDB entry 9RFS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 1ALA 272
B
 SER 1ALA 272
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 24 helices in PDB entry 9RFS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 9Right-handed alpha
Helix 2
AA2
A
24 37Right-handed alpha
Helix 3
AA3
A
46 62Right-handed alpha
Helix 4
AA4
A
76 85Right-handed alpha
Helix 5
AA5
A
95 105Right-handed alpha
Helix 6
AA6
A
116 120Right-handed 310
Helix 7
AA7
A
134 138Right-handed 310
Helix 8
AA8
A
141 150Right-handed alpha
Helix 9
AA9
A
165 172Right-handed alpha
Helix 10
AB1
A
173 176Right-handed 310
Helix 11
AB2
A
232 244Right-handed alpha
Helix 12
AB3
A
260 262Right-handed 310
Helix 13
AB4
B
2 9Right-handed alpha
Helix 14
AB5
B
24 37Right-handed alpha
Helix 15
AB6
B
46 62Right-handed alpha
Helix 16
AB7
B
76 85Right-handed alpha
Helix 17
AB8
B
95 105Right-handed alpha
Helix 18
AB9
B
116 120Right-handed 310
Helix 19
AC1
B
134 138Right-handed 310
Helix 20
AC2
B
141 150Right-handed alpha
Helix 21
AC3
B
165 172Right-handed alpha
Helix 22
AC4
B
173 176Right-handed 310
Helix 23
AC5
B
232 244Right-handed alpha
Helix 24
AC6
B
260 262Right-handed 310
Back to top of page

There are 4 sheets in PDB entry 9RFS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 114first strand
Strand 2
A
88 93parallel
Strand 3
A
67 71parallel
Strand 4
A
126 131parallel
Strand 5
A
153 164parallel
Strand 6
A
264 269anti-parallel
Strand 7
A
249 250anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
178 182first strand
Strand 2
A
193 202anti-parallel
Strand 3
A
207 216anti-parallel
Strand 4
A
221 229anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
110 114first strand
Strand 2
B
88 93parallel
Strand 3
B
67 71parallel
Strand 4
B
126 131parallel
Strand 5
B
153 164parallel
Strand 6
B
264 269anti-parallel
Strand 7
B
249 250anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
178 182first strand
Strand 2
B
193 202anti-parallel
Strand 3
B
207 216anti-parallel
Strand 4
B
221 229anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il