Analysis of interatomic Contacts of Structural Units in PDB entry:
9RFY


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9RFY entry

There are 2 chains in PDB entry 9RFY (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 1LEU 334
B
 LEU 1LEU 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 9RFY. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 49Right-handed alpha
Helix 2
AA2
A
59 72Right-handed alpha
Helix 3
AA3
A
74 90Right-handed alpha
Helix 4
AA4
A
103 107Right-handed 310
Helix 5
AA5
A
135 139Right-handed 310
Helix 6
AA6
A
145 161Right-handed alpha
Helix 7
AA7
A
165 184Right-handed alpha
Helix 8
AA8
A
192 207Right-handed alpha
Helix 9
AA9
A
219 229Right-handed alpha
Helix 10
AB1
A
247 255Right-handed alpha
Helix 11
AB2
A
281 292Right-handed alpha
Helix 12
AB3
A
292 298Right-handed alpha
Helix 13
AB4
A
303 319Right-handed alpha
Helix 14
AB5
B
40 49Right-handed alpha
Helix 15
AB6
B
59 72Right-handed alpha
Helix 16
AB7
B
74 90Right-handed alpha
Helix 17
AB8
B
103 107Right-handed 310
Helix 18
AB9
B
135 139Right-handed 310
Helix 19
AC1
B
145 161Right-handed alpha
Helix 20
AC2
B
165 184Right-handed alpha
Helix 21
AC3
B
192 207Right-handed alpha
Helix 22
AC4
B
220 228Right-handed alpha
Helix 23
AC5
B
247 255Right-handed alpha
Helix 24
AC6
B
281 292Right-handed alpha
Helix 25
AC7
B
292 298Right-handed alpha
Helix 26
AC8
B
303 319Right-handed alpha
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There are 5 sheets in PDB entry 9RFY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
57 58first strand
Strand 2
A
97 98anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
188 189first strand
Strand 2
A
260 262anti-parallel
Strand 3
A
270 272anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
57 58first strand
Strand 2
B
97 98anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 164first strand
Strand 2
B
218 219anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
188 189first strand
Strand 2
B
260 262anti-parallel
Strand 3
B
270 272anti-parallel
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