Analysis of interatomic Contacts of Structural Units in PDB entry:
9RGL

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RGL entry

There are 4 chains in PDB entry 9RGL (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 3	GLU 319
F	LEU 12	LYS 111
G	MET 1	GLN 317
J	LYS 11	ALA 110

There are 41 helices in PDB entry 9RGL. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	6	13	Right-handed alpha
Helix 2	AA2	A	24	30	Right-handed alpha
Helix 3	AA3	A	33	40	Right-handed alpha
Helix 4	AA4	A	48	57	Right-handed alpha
Helix 5	AA5	A	66	78	Right-handed alpha
Helix 6	AA6	A	98	106	Right-handed alpha
Helix 7	AA7	A	115	126	Right-handed alpha
Helix 8	AA8	A	128	141	Right-handed alpha
Helix 9	AA9	A	144	146	Right-handed 310
Helix 10	AB1	A	147	152	Right-handed alpha
Helix 11	AB2	A	179	192	Right-handed alpha
Helix 12	AB3	A	197	201	Right-handed alpha
Helix 13	AB4	A	232	248	Right-handed alpha
Helix 14	AB5	A	253	274	Right-handed alpha
Helix 15	AB6	A	277	288	Right-handed alpha
Helix 16	AB7	A	296	306	Right-handed 310
Helix 17	AB8	A	307	318	Right-handed alpha
Helix 18	AB9	F	34	51	Right-handed alpha
Helix 19	AC1	F	74	79	Right-handed alpha
Helix 20	AC2	F	99	104	Right-handed alpha
Helix 21	AC3	G	6	14	Right-handed alpha
Helix 22	AC4	G	21	41	Right-handed alpha
Helix 23	AC5	G	43	47	Right-handed 310
Helix 24	AC6	G	48	59	Right-handed alpha
Helix 25	AC7	G	64	84	Right-handed alpha
Helix 26	AC8	G	98	103	Right-handed alpha
Helix 27	AC9	G	115	126	Right-handed alpha
Helix 28	AD1	G	128	141	Right-handed alpha
Helix 29	AD2	G	144	146	Right-handed 310
Helix 30	AD3	G	147	153	Right-handed alpha
Helix 31	AD4	G	154	158	Right-handed 310
Helix 32	AD5	G	179	192	Right-handed alpha
Helix 33	AD6	G	198	200	Right-handed 310
Helix 34	AD7	G	232	248	Right-handed alpha
Helix 35	AD8	G	253	274	Right-handed alpha
Helix 36	AD9	G	277	288	Right-handed alpha
Helix 37	AE1	G	300	307	Right-handed alpha
Helix 38	AE2	G	308	313	Right-handed alpha
Helix 39	AE3	J	34	51	Right-handed alpha
Helix 40	AE4	J	74	79	Right-handed alpha
Helix 41	AE5	J	96	105	Right-handed 310

There are 6 sheets in PDB entry 9RGL. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	163	168	first strand
Strand 2	A	172	177	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	194	196	first strand
Strand 2	A	208	210	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	82	90	first strand
Strand 2	J	14	32	anti-parallel
Strand 3	F	14	32	anti-parallel
Strand 4	J	82	90	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	68	73	first strand
Strand 2	F	55	61	anti-parallel
Strand 3	J	55	61	anti-parallel
Strand 4	J	68	73	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	163	168	first strand
Strand 2	G	172	177	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	194	196	first strand
Strand 2	G	208	210	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RGL

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RGL