Analysis of interatomic Contacts of Structural Units in PDB entry:
9RGM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RGM entry

There are 5 chains in PDB entry 9RGM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 4	SER 333
B	ILE 4	SER 333
C	ILE 4	SER 333
D	ILE 4	SER 333
E	ILE 4	SER 333

There are 35 helices in PDB entry 9RGM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	78	83	Right-handed 310
Helix 2	AA2	A	213	234	Right-handed alpha
Helix 3	AA3	A	241	246	Right-handed 310
Helix 4	AA4	A	247	261	Right-handed alpha
Helix 5	AA5	A	262	265	Right-handed 310
Helix 6	AA6	A	274	303	Right-handed alpha
Helix 7	AA7	A	311	333	Right-handed alpha
Helix 8	AA8	B	78	83	Right-handed 310
Helix 9	AA9	B	213	234	Right-handed alpha
Helix 10	AB1	B	241	246	Right-handed 310
Helix 11	AB2	B	247	261	Right-handed alpha
Helix 12	AB3	B	262	265	Right-handed 310
Helix 13	AB4	B	274	303	Right-handed alpha
Helix 14	AB5	B	311	333	Right-handed alpha
Helix 15	AB6	C	78	83	Right-handed 310
Helix 16	AB7	C	213	234	Right-handed alpha
Helix 17	AB8	C	241	246	Right-handed 310
Helix 18	AB9	C	247	261	Right-handed alpha
Helix 19	AC1	C	262	265	Right-handed 310
Helix 20	AC2	C	274	303	Right-handed alpha
Helix 21	AC3	C	311	333	Right-handed alpha
Helix 22	AC4	D	78	83	Right-handed 310
Helix 23	AC5	D	213	234	Right-handed alpha
Helix 24	AC6	D	241	246	Right-handed 310
Helix 25	AC7	D	247	261	Right-handed alpha
Helix 26	AC8	D	262	265	Right-handed 310
Helix 27	AC9	D	274	303	Right-handed alpha
Helix 28	AD1	D	311	333	Right-handed alpha
Helix 29	AD2	E	78	83	Right-handed 310
Helix 30	AD3	E	213	234	Right-handed alpha
Helix 31	AD4	E	241	246	Right-handed 310
Helix 32	AD5	E	247	261	Right-handed alpha
Helix 33	AD6	E	262	265	Right-handed 310
Helix 34	AD7	E	274	303	Right-handed alpha
Helix 35	AD8	E	311	333	Right-handed alpha

There are 15 sheets in PDB entry 9RGM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	44	first strand
Strand 2	A	49	61	anti-parallel
Strand 3	A	118	129	anti-parallel
Strand 4	A	106	114	anti-parallel
Strand 5	A	74	76	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	44	first strand
Strand 2	A	49	61	anti-parallel
Strand 3	A	29	37	anti-parallel
Strand 4	A	159	163	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	91	first strand
Strand 2	A	144	150	anti-parallel
Strand 3	A	198	211	anti-parallel
Strand 4	A	179	193	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	44	first strand
Strand 2	B	49	61	anti-parallel
Strand 3	B	118	129	anti-parallel
Strand 4	B	106	114	anti-parallel
Strand 5	B	74	76	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	44	first strand
Strand 2	B	49	61	anti-parallel
Strand 3	B	29	37	anti-parallel
Strand 4	B	159	163	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	91	first strand
Strand 2	B	144	150	anti-parallel
Strand 3	B	198	211	anti-parallel
Strand 4	B	179	193	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	44	first strand
Strand 2	C	49	61	anti-parallel
Strand 3	C	118	129	anti-parallel
Strand 4	C	106	114	anti-parallel
Strand 5	C	74	76	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	42	44	first strand
Strand 2	C	49	61	anti-parallel
Strand 3	C	29	37	anti-parallel
Strand 4	C	159	163	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	90	91	first strand
Strand 2	C	144	150	anti-parallel
Strand 3	C	198	211	anti-parallel
Strand 4	C	179	193	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	44	first strand
Strand 2	D	49	61	anti-parallel
Strand 3	D	118	129	anti-parallel
Strand 4	D	106	114	anti-parallel
Strand 5	D	74	76	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	42	44	first strand
Strand 2	D	49	61	anti-parallel
Strand 3	D	29	37	anti-parallel
Strand 4	D	159	163	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	90	91	first strand
Strand 2	D	144	150	anti-parallel
Strand 3	D	198	211	anti-parallel
Strand 4	D	179	193	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	44	first strand
Strand 2	E	49	61	anti-parallel
Strand 3	E	118	129	anti-parallel
Strand 4	E	106	114	anti-parallel
Strand 5	E	74	76	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	42	44	first strand
Strand 2	E	49	61	anti-parallel
Strand 3	E	29	37	anti-parallel
Strand 4	E	159	163	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	90	91	first strand
Strand 2	E	144	150	anti-parallel
Strand 3	E	198	211	anti-parallel
Strand 4	E	179	193	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RGM

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RGM