Analysis of interatomic Contacts of Structural Units in PDB entry:
9RGP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RGP entry

There are 5 chains in PDB entry 9RGP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 3	CYS 298
B	VAL 3	CYS 298
C	VAL 3	CYS 298
D	VAL 3	CYS 298
E	VAL 3	CYS 298

There are 50 helices in PDB entry 9RGP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	16	20	Right-handed 310
Helix 2	AA2	A	78	83	Right-handed 310
Helix 3	AA3	A	134	138	Right-handed 310
Helix 4	AA4	A	194	197	Right-handed 310
Helix 5	AA5	A	213	220	Right-handed alpha
Helix 6	AA6	A	220	233	Right-handed alpha
Helix 7	AA7	A	234	236	Right-handed 310
Helix 8	AA8	A	242	261	Right-handed alpha
Helix 9	AA9	A	262	265	Right-handed 310
Helix 10	AB1	A	274	298	Right-handed alpha
Helix 11	AB2	B	16	20	Right-handed 310
Helix 12	AB3	B	78	83	Right-handed 310
Helix 13	AB4	B	134	138	Right-handed 310
Helix 14	AB5	B	194	197	Right-handed 310
Helix 15	AB6	B	213	220	Right-handed alpha
Helix 16	AB7	B	220	233	Right-handed alpha
Helix 17	AB8	B	234	236	Right-handed 310
Helix 18	AB9	B	242	261	Right-handed alpha
Helix 19	AC1	B	262	265	Right-handed 310
Helix 20	AC2	B	274	298	Right-handed alpha
Helix 21	AC3	C	16	20	Right-handed 310
Helix 22	AC4	C	78	83	Right-handed 310
Helix 23	AC5	C	134	138	Right-handed 310
Helix 24	AC6	C	194	197	Right-handed 310
Helix 25	AC7	C	213	220	Right-handed alpha
Helix 26	AC8	C	220	233	Right-handed alpha
Helix 27	AC9	C	234	236	Right-handed 310
Helix 28	AD1	C	242	261	Right-handed alpha
Helix 29	AD2	C	262	265	Right-handed 310
Helix 30	AD3	C	274	298	Right-handed alpha
Helix 31	AD4	D	16	20	Right-handed 310
Helix 32	AD5	D	78	83	Right-handed 310
Helix 33	AD6	D	134	138	Right-handed 310
Helix 34	AD7	D	194	197	Right-handed 310
Helix 35	AD8	D	213	220	Right-handed alpha
Helix 36	AD9	D	220	233	Right-handed alpha
Helix 37	AE1	D	234	236	Right-handed 310
Helix 38	AE2	D	242	261	Right-handed alpha
Helix 39	AE3	D	262	265	Right-handed 310
Helix 40	AE4	D	274	298	Right-handed alpha
Helix 41	AE5	E	16	20	Right-handed 310
Helix 42	AE6	E	78	83	Right-handed 310
Helix 43	AE7	E	134	138	Right-handed 310
Helix 44	AE8	E	194	197	Right-handed 310
Helix 45	AE9	E	213	220	Right-handed alpha
Helix 46	AF1	E	220	233	Right-handed alpha
Helix 47	AF2	E	234	236	Right-handed 310
Helix 48	AF3	E	242	261	Right-handed alpha
Helix 49	AF4	E	262	265	Right-handed 310
Helix 50	AF5	E	274	298	Right-handed alpha

There are 10 sheets in PDB entry 9RGP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	76	first strand
Strand 2	A	106	114	anti-parallel
Strand 3	A	118	130	anti-parallel
Strand 4	A	49	61	anti-parallel
Strand 5	A	29	44	anti-parallel
Strand 6	A	159	163	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	89	91	first strand
Strand 2	A	142	151	anti-parallel
Strand 3	A	198	211	anti-parallel
Strand 4	A	179	193	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	76	first strand
Strand 2	B	106	114	anti-parallel
Strand 3	B	118	130	anti-parallel
Strand 4	B	49	61	anti-parallel
Strand 5	B	29	44	anti-parallel
Strand 6	B	159	163	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	89	91	first strand
Strand 2	B	142	151	anti-parallel
Strand 3	B	198	211	anti-parallel
Strand 4	B	179	193	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	76	first strand
Strand 2	C	106	114	anti-parallel
Strand 3	C	118	130	anti-parallel
Strand 4	C	49	61	anti-parallel
Strand 5	C	29	44	anti-parallel
Strand 6	C	159	163	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	89	91	first strand
Strand 2	C	142	151	anti-parallel
Strand 3	C	198	211	anti-parallel
Strand 4	C	179	193	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	76	first strand
Strand 2	D	106	114	anti-parallel
Strand 3	D	118	130	anti-parallel
Strand 4	D	49	61	anti-parallel
Strand 5	D	29	44	anti-parallel
Strand 6	D	159	163	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	89	91	first strand
Strand 2	D	142	151	anti-parallel
Strand 3	D	198	211	anti-parallel
Strand 4	D	179	193	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	74	76	first strand
Strand 2	E	106	114	anti-parallel
Strand 3	E	118	130	anti-parallel
Strand 4	E	49	61	anti-parallel
Strand 5	E	29	44	anti-parallel
Strand 6	E	159	163	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	89	91	first strand
Strand 2	E	142	151	anti-parallel
Strand 3	E	198	211	anti-parallel
Strand 4	E	179	193	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RGP

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RGP