Analysis of interatomic Contacts of Structural Units in PDB entry:
9RGQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9RGQ entry

There are 2 chains in PDB entry 9RGQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 31HIS 290
B
 ALA 31HIS 290
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 33 helices in PDB entry 9RGQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 45Right-handed 310
Helix 2
AA2
A
54 58Right-handed 310
Helix 3
AA3
A
62 79Right-handed alpha
Helix 4
AA4
A
99 105Right-handed alpha
Helix 5
AA5
A
107 115Right-handed alpha
Helix 6
AA6
A
121 126Right-handed 310
Helix 7
AA7
A
140 149Right-handed alpha
Helix 8
AA8
A
162 168Right-handed 310
Helix 9
AA9
A
177 184Right-handed alpha
Helix 10
AB1
A
184 195Right-handed alpha
Helix 11
AB2
A
200 206Right-handed alpha
Helix 12
AB3
A
214 216Right-handed 310
Helix 13
AB4
A
217 231Right-handed alpha
Helix 14
AB5
A
233 246Right-handed alpha
Helix 15
AB6
A
247 249Right-handed 310
Helix 16
AB7
A
251 267Right-handed alpha
Helix 17
AB8
A
269 281Right-handed alpha
Helix 18
AB9
B
42 45Right-handed 310
Helix 19
AC1
B
54 58Right-handed 310
Helix 20
AC2
B
62 79Right-handed alpha
Helix 21
AC3
B
99 105Right-handed alpha
Helix 22
AC4
B
107 114Right-handed alpha
Helix 23
AC5
B
117 126Right-handed 310
Helix 24
AC6
B
140 149Right-handed alpha
Helix 25
AC7
B
163 168Right-handed 310
Helix 26
AC8
B
177 184Right-handed alpha
Helix 27
AC9
B
184 195Right-handed alpha
Helix 28
AD1
B
200 206Right-handed alpha
Helix 29
AD2
B
217 231Right-handed alpha
Helix 30
AD3
B
233 246Right-handed alpha
Helix 31
AD4
B
247 249Right-handed 310
Helix 32
AD5
B
251 267Right-handed alpha
Helix 33
AD6
B
269 281Right-handed alpha
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There are 4 sheets in PDB entry 9RGQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
36 41first strand
Strand 2
A
47 52anti-parallel
Strand 3
A
84 88parallel
Strand 4
A
130 134parallel
Strand 5
A
151 155parallel
Strand 6
A
211 213parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 96first strand
Strand 2
A
137 139parallel
Strand 3
A
159 161parallel
Strand 4
A
198 199anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
36 41first strand
Strand 2
B
47 52anti-parallel
Strand 3
B
84 88parallel
Strand 4
B
130 134parallel
Strand 5
B
151 155parallel
Strand 6
B
211 213parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
93 96first strand
Strand 2
B
137 139parallel
Strand 3
B
159 161parallel
Strand 4
B
197 199anti-parallel
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