Analysis of interatomic Contacts of Structural Units in PDB entry:
9RGR

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RGR entry

There are 8 chains in PDB entry 9RGR (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 31	ASP 110
A	TYR 112	HIS 290
B	ASN 32	HIS 290
C	ASN 32	HIS 290
D	ALA 31	HIS 290
E	ALA 31	ASP 110
E	TYR 112	HIS 290
F	ASN 32	HIS 290

There are100 helices in PDB entry 9RGR. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	54	58	Right-handed 310
Helix 2	AA2	A	62	78	Right-handed alpha
Helix 3	AA3	A	99	104	Right-handed alpha
Helix 4	AA4	A	107	112	Right-handed alpha
Helix 5	AA5	A	121	126	Right-handed 310
Helix 6	AA6	A	140	149	Right-handed alpha
Helix 7	AA7	A	162	168	Right-handed 310
Helix 8	AA8	A	177	184	Right-handed alpha
Helix 9	AA9	A	184	195	Right-handed alpha
Helix 10	AB1	A	200	206	Right-handed alpha
Helix 11	AB2	A	217	232	Right-handed alpha
Helix 12	AB3	A	233	246	Right-handed alpha
Helix 13	AB4	A	247	249	Right-handed 310
Helix 14	AB5	A	251	267	Right-handed alpha
Helix 15	AB6	A	269	281	Right-handed alpha
Helix 16	AB7	B	42	45	Right-handed 310
Helix 17	AB8	B	54	58	Right-handed 310
Helix 18	AB9	B	62	79	Right-handed alpha
Helix 19	AC1	B	99	104	Right-handed alpha
Helix 20	AC2	B	107	112	Right-handed alpha
Helix 21	AC3	B	119	126	Right-handed 310
Helix 22	AC4	B	140	149	Right-handed alpha
Helix 23	AC5	B	162	168	Right-handed 310
Helix 24	AC6	B	177	184	Right-handed alpha
Helix 25	AC7	B	184	195	Right-handed alpha
Helix 26	AC8	B	200	206	Right-handed alpha
Helix 27	AC9	B	214	216	Right-handed 310
Helix 28	AD1	B	217	231	Right-handed alpha
Helix 29	AD2	B	233	246	Right-handed alpha
Helix 30	AD3	B	247	249	Right-handed 310
Helix 31	AD4	B	251	267	Right-handed alpha
Helix 32	AD5	B	269	281	Right-handed alpha
Helix 33	AD6	C	42	45	Right-handed 310
Helix 34	AD7	C	54	58	Right-handed 310
Helix 35	AD8	C	62	79	Right-handed alpha
Helix 36	AD9	C	99	104	Right-handed alpha
Helix 37	AE1	C	107	113	Right-handed alpha
Helix 38	AE2	C	119	126	Right-handed 310
Helix 39	AE3	C	140	149	Right-handed alpha
Helix 40	AE4	C	163	168	Right-handed 310
Helix 41	AE5	C	177	184	Right-handed alpha
Helix 42	AE6	C	184	195	Right-handed alpha
Helix 43	AE7	C	200	207	Right-handed alpha
Helix 44	AE8	C	214	216	Right-handed 310
Helix 45	AE9	C	217	232	Right-handed alpha
Helix 46	AF1	C	233	246	Right-handed alpha
Helix 47	AF2	C	247	249	Right-handed 310
Helix 48	AF3	C	251	267	Right-handed alpha
Helix 49	AF4	C	269	281	Right-handed alpha
Helix 50	AF5	D	42	45	Right-handed 310
Helix 51	AF6	D	54	58	Right-handed 310
Helix 52	AF7	D	62	79	Right-handed alpha
Helix 53	AF8	D	99	104	Right-handed alpha
Helix 54	AF9	D	107	114	Right-handed alpha
Helix 55	AG1	D	121	126	Right-handed 310
Helix 56	AG2	D	140	149	Right-handed alpha
Helix 57	AG3	D	162	168	Right-handed 310
Helix 58	AG4	D	177	184	Right-handed alpha
Helix 59	AG5	D	184	195	Right-handed alpha
Helix 60	AG6	D	200	206	Right-handed alpha
Helix 61	AG7	D	214	216	Right-handed 310
Helix 62	AG8	D	217	232	Right-handed alpha
Helix 63	AG9	D	233	246	Right-handed alpha
Helix 64	AH1	D	247	249	Right-handed 310
Helix 65	AH2	D	251	267	Right-handed alpha
Helix 66	AH3	D	269	281	Right-handed alpha
Helix 67	AH4	E	42	45	Right-handed 310
Helix 68	AH5	E	54	58	Right-handed 310
Helix 69	AH6	E	62	79	Right-handed alpha
Helix 70	AH7	E	99	104	Right-handed alpha
Helix 71	AH8	E	107	113	Right-handed alpha
Helix 72	AH9	E	121	126	Right-handed 310
Helix 73	AI1	E	140	149	Right-handed alpha
Helix 74	AI2	E	162	168	Right-handed 310
Helix 75	AI3	E	177	184	Right-handed alpha
Helix 76	AI4	E	184	195	Right-handed alpha
Helix 77	AI5	E	200	206	Right-handed alpha
Helix 78	AI6	E	214	216	Right-handed 310
Helix 79	AI7	E	217	232	Right-handed alpha
Helix 80	AI8	E	233	246	Right-handed alpha
Helix 81	AI9	E	247	249	Right-handed 310
Helix 82	AJ1	E	251	267	Right-handed alpha
Helix 83	AJ2	E	269	281	Right-handed alpha
Helix 84	AJ3	F	42	45	Right-handed 310
Helix 85	AJ4	F	54	58	Right-handed 310
Helix 86	AJ5	F	62	78	Right-handed alpha
Helix 87	AJ6	F	99	104	Right-handed alpha
Helix 88	AJ7	F	107	114	Right-handed alpha
Helix 89	AJ8	F	119	126	Right-handed 310
Helix 90	AJ9	F	140	149	Right-handed alpha
Helix 91	AK1	F	162	168	Right-handed 310
Helix 92	AK2	F	177	184	Right-handed alpha
Helix 93	AK3	F	184	195	Right-handed alpha
Helix 94	AK4	F	200	206	Right-handed alpha
Helix 95	AK5	F	214	216	Right-handed 310
Helix 96	AK6	F	217	231	Right-handed alpha
Helix 97	AK7	F	233	246	Right-handed alpha
Helix 98	AK8	F	247	249	Right-handed 310
Helix 99	AK9	F	251	267	Right-handed alpha
Helix 100	AL1	F	269	281	Right-handed alpha

There are 12 sheets in PDB entry 9RGR. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	36	41	first strand
Strand 2	A	47	52	anti-parallel
Strand 3	A	84	88	parallel
Strand 4	A	130	134	parallel
Strand 5	A	151	155	parallel
Strand 6	A	211	213	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	95	first strand
Strand 2	A	137	139	parallel
Strand 3	A	159	161	parallel
Strand 4	A	198	199	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	36	41	first strand
Strand 2	B	47	52	anti-parallel
Strand 3	B	84	88	parallel
Strand 4	B	130	134	parallel
Strand 5	B	151	155	parallel
Strand 6	B	211	213	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	93	95	first strand
Strand 2	B	137	139	parallel
Strand 3	B	159	161	parallel
Strand 4	B	198	199	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	36	41	first strand
Strand 2	C	47	52	anti-parallel
Strand 3	C	84	88	parallel
Strand 4	C	130	134	parallel
Strand 5	C	151	155	parallel
Strand 6	C	211	213	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	93	95	first strand
Strand 2	C	137	139	parallel
Strand 3	C	159	161	parallel
Strand 4	C	197	199	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	36	41	first strand
Strand 2	D	47	52	anti-parallel
Strand 3	D	84	88	parallel
Strand 4	D	130	134	parallel
Strand 5	D	151	155	parallel
Strand 6	D	211	213	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	93	96	first strand
Strand 2	D	137	139	parallel
Strand 3	D	159	161	parallel
Strand 4	D	198	199	anti-parallel

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There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	36	41	first strand
Strand 2	E	47	52	anti-parallel
Strand 3	E	84	88	parallel
Strand 4	E	130	134	parallel
Strand 5	E	151	155	parallel
Strand 6	E	211	213	parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	93	95	first strand
Strand 2	E	137	139	parallel
Strand 3	E	159	161	parallel
Strand 4	E	198	199	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	36	41	first strand
Strand 2	F	47	52	anti-parallel
Strand 3	F	84	88	parallel
Strand 4	F	130	134	parallel
Strand 5	F	151	155	parallel
Strand 6	F	211	213	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	93	95	first strand
Strand 2	F	137	139	parallel
Strand 3	F	159	161	parallel
Strand 4	F	198	199	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RGR

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RGR