Analysis of interatomic Contacts of Structural Units in PDB entry:
9RHC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9RHC entry

There are 3 chains in PDB entry 9RHC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 388
B
 GLU 1SER 118
C
 ASP 1ILE 106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 9RHC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1 10Right-handed alpha
Helix 2
AA2
A
11 31Right-handed alpha
Helix 3
AA3
A
31 43Right-handed alpha
Helix 4
AA4
A
59 85Right-handed alpha
Helix 5
AA5
A
86 89Right-handed 310
Helix 6
AA6
A
90 117Right-handed alpha
Helix 7
AA7
A
121 126Right-handed 310
Helix 8
AA8
A
133 143Right-handed alpha
Helix 9
AA9
A
144 148Right-handed 310
Helix 10
AB1
A
149 175Right-handed alpha
Helix 11
AB2
A
180 200Right-handed alpha
Helix 12
AB3
A
204 219Right-handed alpha
Helix 13
AB4
A
222 237Right-handed alpha
Helix 14
AB5
A
246 262Right-handed alpha
Helix 15
AB6
A
262 272Right-handed alpha
Helix 16
AB7
A
282 285Right-handed 310
Helix 17
AB8
A
286 298Right-handed alpha
Helix 18
AB9
A
298 314Right-handed alpha
Helix 19
AC1
A
324 335Right-handed alpha
Helix 20
AC2
A
338 351Right-handed alpha
Helix 21
AC3
A
354 384Right-handed alpha
Helix 22
AC4
B
28 32Right-handed 310
Helix 23
AC5
C
79 83Right-handed 310
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There are 8 sheets in PDB entry 9RHC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 50first strand
Strand 2
A
53 58anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 6first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 73anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
112 116parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
34 40anti-parallel
Strand 5
B
44 51anti-parallel
Strand 6
B
58 60anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
112 116parallel
Strand 3
B
92 99anti-parallel
Strand 4
B
105 108anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 6first strand
Strand 2
C
23 25anti-parallel
Strand 3
C
70 75anti-parallel
Strand 4
C
19 20anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 6first strand
Strand 2
C
23 25anti-parallel
Strand 3
C
70 75anti-parallel
Strand 4
C
62 66anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 12first strand
Strand 2
C
102 105parallel
Strand 3
C
85 90anti-parallel
Strand 4
C
33 38anti-parallel
Strand 5
C
44 49anti-parallel
Strand 6
C
53 54anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 12first strand
Strand 2
C
102 105parallel
Strand 3
C
85 90anti-parallel
Strand 4
C
97 98anti-parallel
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