Analysis of interatomic Contacts of Structural Units in PDB entry:
9RHE


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9RHE entry

There are 3 chains in PDB entry 9RHE (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 11VAL 388
B
 GLU 1SER 118
C
 ASP 1ILE 106
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 9RHE. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
11 31Right-handed alpha
Helix 2
AA2
A
31 44Right-handed alpha
Helix 3
AA3
A
59 85Right-handed alpha
Helix 4
AA4
A
90 117Right-handed alpha
Helix 5
AA5
A
122 128Right-handed 310
Helix 6
AA6
A
133 145Right-handed alpha
Helix 7
AA7
A
146 148Right-handed 310
Helix 8
AA8
A
149 175Right-handed alpha
Helix 9
AA9
A
180 200Right-handed alpha
Helix 10
AB1
A
204 219Right-handed alpha
Helix 11
AB2
A
222 237Right-handed alpha
Helix 12
AB3
A
246 262Right-handed alpha
Helix 13
AB4
A
262 272Right-handed alpha
Helix 14
AB5
A
282 285Right-handed 310
Helix 15
AB6
A
286 298Right-handed alpha
Helix 16
AB7
A
298 314Right-handed alpha
Helix 17
AB8
A
324 335Right-handed alpha
Helix 18
AB9
A
338 351Right-handed alpha
Helix 19
AC1
A
354 382Right-handed alpha
Helix 20
AC2
B
28 32Right-handed 310
Helix 21
AC3
C
79 83Right-handed 310
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There are 6 sheets in PDB entry 9RHE. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
45 50first strand
Strand 2
A
53 58anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
3 6first strand
Strand 2
B
18 25anti-parallel
Strand 3
B
78 83anti-parallel
Strand 4
B
68 73anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
10 12first strand
Strand 2
B
112 116parallel
Strand 3
B
93 98anti-parallel
Strand 4
B
34 40anti-parallel
Strand 5
B
44 51anti-parallel
Strand 6
B
58 60anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
4 5first strand
Strand 2
C
19 25anti-parallel
Strand 3
C
70 75anti-parallel
Strand 4
C
62 66anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 12first strand
Strand 2
C
102 105parallel
Strand 3
C
85 90anti-parallel
Strand 4
C
33 38anti-parallel
Strand 5
C
44 49anti-parallel
Strand 6
C
53 54anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
10 12first strand
Strand 2
C
102 105parallel
Strand 3
C
85 90anti-parallel
Strand 4
C
97 98anti-parallel
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