Analysis of interatomic Contacts of Structural Units in PDB entry:
9RHQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9RHQ entry

There are 2 chains in PDB entry 9RHQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLY 225
B
 MET 1GLY 225
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 9RHQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
35 46Right-handed alpha
Helix 2
AA2
A
65 73Right-handed alpha
Helix 3
AA3
A
82 84Right-handed 310
Helix 4
AA4
A
146 158Right-handed alpha
Helix 5
AA5
A
181 188Right-handed alpha
Helix 6
AA6
A
195 204Right-handed alpha
Helix 7
AA7
A
213 222Right-handed alpha
Helix 8
AA8
B
35 46Right-handed alpha
Helix 9
AA9
B
65 74Right-handed alpha
Helix 10
AB1
B
82 84Right-handed 310
Helix 11
AB2
B
146 158Right-handed alpha
Helix 12
AB3
B
181 188Right-handed alpha
Helix 13
AB4
B
195 204Right-handed alpha
Helix 14
AB5
B
213 223Right-handed alpha
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There are 6 sheets in PDB entry 9RHQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2 8first strand
Strand 2
A
13 20anti-parallel
Strand 3
A
25 29anti-parallel
Strand 4
A
49 54parallel
Strand 5
A
76 80parallel
Strand 6
A
90 92parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
97 100first strand
Strand 2
A
103 109anti-parallel
Strand 3
A
118 122anti-parallel
Strand 4
A
125 129anti-parallel
Strand 5
A
166 169parallel
Strand 6
A
179 180anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 133first strand
Strand 2
A
136 137anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
2 8first strand
Strand 2
B
13 20anti-parallel
Strand 3
B
25 29anti-parallel
Strand 4
B
49 54parallel
Strand 5
B
76 80parallel
Strand 6
B
90 92parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
97 100first strand
Strand 2
B
103 109anti-parallel
Strand 3
B
118 122anti-parallel
Strand 4
B
125 129anti-parallel
Strand 5
B
166 169parallel
Strand 6
B
179 180anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
132 133first strand
Strand 2
B
136 137anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il