Analysis of interatomic Contacts of Structural Units in PDB entry:
9RIP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 9RIP entry

There are 6 chains in PDB entry 9RIP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 2LEU 297
B
 SER 10THR 253
C
 PHE 2GLN 242
D
 HIS 13LYS 69
L
 GLN 1LEU 111
H
 GLN 1SER 124
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 9RIP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
49 53Right-handed 310
Helix 2
AA2
A
75 79Right-handed 310
Helix 3
AA3
A
116 124Right-handed alpha
Helix 4
AA4
A
168 173Right-handed 310
Helix 5
AA5
A
225 229Right-handed 310
Helix 6
AA6
A
280 284Right-handed 310
Helix 7
AA7
B
35 37Right-handed 310
Helix 8
AA8
B
83 87Right-handed 310
Helix 9
AA9
B
89 98Right-handed alpha
Helix 10
AB1
B
147 152Right-handed alpha
Helix 11
AB2
B
174 178Right-handed 310
Helix 12
AB3
C
42 46Right-handed 310
Helix 13
AB4
C
61 70Right-handed 310
Helix 14
AB5
C
94 98Right-handed 310
Helix 15
AB6
C
99 106Right-handed alpha
Helix 16
AB7
C
145 151Right-handed alpha
Helix 17
AB8
C
184 190Right-handed 310
Helix 18
AB9
D
35 39Right-handed 310
Helix 19
AC1
D
50 55Right-handed alpha
Helix 20
AC2
L
30 34Right-handed 310
Helix 21
AC3
L
81 85Right-handed 310
Helix 22
AC4
H
87 91Right-handed 310
Helix 23
AC5
H
106 109Right-handed 310
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There are 18 sheets in PDB entry 9RIP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
24 25first strand
Strand 2
D
47 48anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
C
164 169anti-parallel
Strand 3
C
115 121anti-parallel
Strand 4
C
211 220anti-parallel
Strand 5
C
51 53anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
47 48first strand
Strand 2
C
164 169anti-parallel
Strand 3
C
115 121anti-parallel
Strand 4
C
211 220anti-parallel
Strand 5
C
71 74anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
88 95first strand
Strand 2
A
247 263anti-parallel
Strand 3
A
126 140anti-parallel
Strand 4
A
188 192anti-parallel
Strand 5
C
22 23parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
201 202first strand
Strand 2
A
126 140anti-parallel
Strand 3
A
247 263anti-parallel
Strand 4
C
39 40anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
106 110first strand
Strand 2
A
232 237anti-parallel
Strand 3
A
150 156anti-parallel
Strand 4
A
178 182anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
14 18first strand
Strand 2
B
21 25anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
32 33first strand
Strand 2
B
190 195parallel
Strand 3
B
99 111anti-parallel
Strand 4
B
232 248anti-parallel
Strand 5
B
64 71anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 159first strand
Strand 2
B
78 82anti-parallel
Strand 3
B
212 223anti-parallel
Strand 4
B
119 128anti-parallel
Strand 5
B
180 184anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
82 87first strand
Strand 2
C
193 203anti-parallel
Strand 3
C
128 136anti-parallel
Strand 4
C
153 158anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
178 179first strand
Strand 2
C
108 112anti-parallel
Strand 3
C
225 229anti-parallel
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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
9 11first strand
Strand 2
L
106 109parallel
Strand 3
L
87 89anti-parallel
Strand 4
L
36 40anti-parallel
Strand 5
L
47 51anti-parallel
Strand 6
L
55 56anti-parallel
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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
17 22first strand
Strand 2
L
72 78anti-parallel
Strand 3
L
64 69anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
92 93first strand
Strand 2
L
100 101anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
3 7first strand
Strand 2
H
18 25anti-parallel
Strand 3
H
78 83anti-parallel
Strand 4
H
68 73anti-parallel
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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
11 12first strand
Strand 2
H
121 122parallel
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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
58 59first strand
Strand 2
H
45 51anti-parallel
Strand 3
H
34 39anti-parallel
Strand 4
H
93 99anti-parallel
Strand 5
H
111 113anti-parallel
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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
H
58 59first strand
Strand 2
H
45 51anti-parallel
Strand 3
H
34 39anti-parallel
Strand 4
H
93 99anti-parallel
Strand 5
H
118 119anti-parallel
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