Analysis of interatomic Contacts of Structural Units in PDB entry:
9RJS

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 9RJS entry

There are 7 chains in PDB entry 9RJS (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 486
B	THR 11	GLN 521
C	SER 2	PRO 698
D	ASN 2	LEU 676
E	PRO 2	ALA 542
X	T 12	G 39
Y	T 39	A 64

There are125 helices in PDB entry 9RJS. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	17	Right-handed alpha
Helix 2	AA2	A	31	43	Right-handed alpha
Helix 3	AA3	A	65	69	Right-handed 310
Helix 4	AA4	A	105	117	Right-handed alpha
Helix 5	AA5	A	122	129	Right-handed alpha
Helix 6	AA6	A	141	155	Right-handed alpha
Helix 7	AA7	A	159	166	Right-handed alpha
Helix 8	AA8	A	167	177	Right-handed alpha
Helix 9	AA9	A	183	195	Right-handed alpha
Helix 10	AB1	A	196	198	Right-handed 310
Helix 11	AB2	A	223	225	Right-handed 310
Helix 12	AB3	A	226	242	Right-handed alpha
Helix 13	AB4	A	247	273	Right-handed alpha
Helix 14	AB5	A	279	284	Right-handed alpha
Helix 15	AB6	A	313	321	Right-handed alpha
Helix 16	AB7	A	321	334	Right-handed alpha
Helix 17	AB8	A	336	347	Right-handed alpha
Helix 18	AB9	A	352	365	Right-handed alpha
Helix 19	AC1	A	409	411	Right-handed 310
Helix 20	AC2	A	430	437	Right-handed alpha
Helix 21	AC3	A	438	446	Right-handed 310
Helix 22	AC4	A	456	460	Right-handed 310
Helix 23	AC5	A	462	474	Right-handed alpha
Helix 24	AC6	A	480	485	Right-handed alpha
Helix 25	AC7	B	29	33	Right-handed 310
Helix 26	AC8	B	153	163	Right-handed alpha
Helix 27	AC9	B	170	177	Right-handed alpha
Helix 28	AD1	B	202	216	Right-handed alpha
Helix 29	AD2	B	221	226	Right-handed alpha
Helix 30	AD3	B	231	245	Right-handed alpha
Helix 31	AD4	B	259	272	Right-handed alpha
Helix 32	AD5	B	277	280	Right-handed 310
Helix 33	AD6	B	300	304	Right-handed 310
Helix 34	AD7	B	311	322	Right-handed alpha
Helix 35	AD8	B	324	333	Right-handed alpha
Helix 36	AD9	B	337	347	Right-handed alpha
Helix 37	AE1	B	347	352	Right-handed alpha
Helix 38	AE2	B	357	369	Right-handed alpha
Helix 39	AE3	B	374	379	Right-handed 310
Helix 40	AE4	B	381	400	Right-handed alpha
Helix 41	AE5	B	401	406	Right-handed alpha
Helix 42	AE6	B	431	442	Right-handed alpha
Helix 43	AE7	B	460	475	Right-handed alpha
Helix 44	AE8	B	483	490	Right-handed alpha
Helix 45	AE9	B	504	520	Right-handed alpha
Helix 46	AF1	C	10	20	Right-handed 310
Helix 47	AF2	C	22	26	Right-handed 310
Helix 48	AF3	C	27	38	Right-handed alpha
Helix 49	AF4	C	39	41	Right-handed 310
Helix 50	AF5	C	55	61	Right-handed alpha
Helix 51	AF6	C	133	140	Right-handed alpha
Helix 52	AF7	C	177	181	Right-handed 310
Helix 53	AF8	C	189	193	Right-handed alpha
Helix 54	AF9	C	249	254	Right-handed alpha
Helix 55	AG1	C	299	327	Right-handed alpha
Helix 56	AG2	C	334	348	Right-handed alpha
Helix 57	AG3	C	402	406	Right-handed 310
Helix 58	AG4	C	421	428	Right-handed alpha
Helix 59	AG5	C	430	454	Right-handed alpha
Helix 60	AG6	C	462	472	Right-handed alpha
Helix 61	AG7	C	472	491	Right-handed alpha
Helix 62	AG8	C	491	499	Right-handed alpha
Helix 63	AG9	C	503	515	Right-handed alpha
Helix 64	AH1	C	528	538	Right-handed alpha
Helix 65	AH2	C	618	629	Right-handed alpha
Helix 66	AH3	C	630	643	Right-handed alpha
Helix 67	AH4	C	643	657	Right-handed alpha
Helix 68	AH5	C	659	663	Right-handed 310
Helix 69	AH6	C	677	691	Right-handed alpha
Helix 70	AH7	D	8	13	Right-handed alpha
Helix 71	AH8	D	15	21	Right-handed alpha
Helix 72	AH9	D	41	50	Right-handed alpha
Helix 73	AI1	D	51	57	Right-handed 310
Helix 74	AI2	D	63	67	Right-handed 310
Helix 75	AI3	D	77	81	Right-handed 310
Helix 76	AI4	D	90	109	Right-handed alpha
Helix 77	AI5	D	114	137	Right-handed alpha
Helix 78	AI6	D	145	154	Right-handed alpha
Helix 79	AI7	D	155	161	Right-handed alpha
Helix 80	AI8	D	168	174	Right-handed alpha
Helix 81	AI9	D	174	185	Right-handed alpha
Helix 82	AJ1	D	193	201	Right-handed alpha
Helix 83	AJ2	D	205	214	Right-handed alpha
Helix 84	AJ3	D	241	256	Right-handed alpha
Helix 85	AJ4	D	258	278	Right-handed alpha
Helix 86	AJ5	D	303	307	Right-handed 310
Helix 87	AJ6	D	314	316	Right-handed 310
Helix 88	AJ7	D	325	329	Right-handed 310
Helix 89	AJ8	D	337	341	Right-handed 310
Helix 90	AJ9	D	351	355	Right-handed alpha
Helix 91	AK1	D	356	360	Right-handed 310
Helix 92	AK2	D	366	385	Right-handed alpha
Helix 93	AK3	D	533	547	Right-handed alpha
Helix 94	AK4	D	569	573	Right-handed 310
Helix 95	AK5	D	575	591	Right-handed alpha
Helix 96	AK6	D	594	605	Right-handed alpha
Helix 97	AK7	D	620	624	Right-handed 310
Helix 98	AK8	D	628	636	Right-handed alpha
Helix 99	AK9	D	637	642	Right-handed alpha
Helix 100	AL1	D	647	653	Right-handed alpha
Helix 101	AL2	D	654	658	Right-handed 310
Helix 102	AL3	D	667	672	Right-handed alpha
Helix 103	AL4	E	3	13	Right-handed alpha
Helix 104	AL5	E	18	24	Right-handed alpha
Helix 105	AL6	E	24	31	Right-handed alpha
Helix 106	AL7	E	40	53	Right-handed alpha
Helix 107	AL8	E	54	57	Right-handed 310
Helix 108	AL9	E	70	79	Right-handed alpha
Helix 109	AM1	E	186	191	Right-handed alpha
Helix 110	AM2	E	205	214	Right-handed alpha
Helix 111	AM3	E	215	223	Right-handed alpha
Helix 112	AM4	E	274	290	Right-handed alpha
Helix 113	AM5	E	296	302	Right-handed 310
Helix 114	AM6	E	303	315	Right-handed alpha
Helix 115	AM7	E	321	336	Right-handed alpha
Helix 116	AM8	E	340	351	Right-handed alpha
Helix 117	AM9	E	356	367	Right-handed alpha
Helix 118	AN1	E	368	373	Right-handed 310
Helix 119	AN2	E	389	394	Right-handed alpha
Helix 120	AN3	E	394	411	Right-handed alpha
Helix 121	AN4	E	417	429	Right-handed alpha
Helix 122	AN5	E	467	469	Right-handed 310
Helix 123	AN6	E	490	495	Right-handed alpha
Helix 124	AN7	E	526	528	Right-handed 310
Helix 125	AN8	E	529	542	Right-handed alpha

There are 25 sheets in PDB entry 9RJS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	7	first strand
Strand 2	C	692	696	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	46	first strand
Strand 2	A	212	216	parallel
Strand 3	A	219	222	anti-parallel
Strand 4	B	282	284	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	56	57	first strand
Strand 2	A	81	82	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	93	94	first strand
Strand 2	A	203	204	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	288	290	first strand
Strand 2	C	614	617	anti-parallel

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There are 8 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	583	585	first strand
Strand 2	A	293	301	anti-parallel
Strand 3	A	422	427	anti-parallel
Strand 4	A	372	377	anti-parallel
Strand 5	A	387	395	anti-parallel
Strand 6	A	309	312	parallel
Strand 7	A	403	407	anti-parallel
Strand 8	A	293	301	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	411	412	first strand
Strand 2	B	478	479	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	52	53	first strand
Strand 2	C	519	520	parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	67	68	first strand
Strand 2	C	151	155	anti-parallel
Strand 3	C	128	132	anti-parallel
Strand 4	C	119	120	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	111	116	first strand
Strand 2	C	97	102	anti-parallel
Strand 3	C	73	80	anti-parallel
Strand 4	C	145	146	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	168	174	first strand
Strand 2	C	417	419	parallel
Strand 3	C	184	188	anti-parallel
Strand 4	C	395	401	parallel
Strand 5	C	386	389	anti-parallel
Strand 6	C	567	574	anti-parallel
Strand 7	C	168	174	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	198	207	first strand
Strand 2	C	369	378	anti-parallel
Strand 3	C	277	285	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	211	213	first strand
Strand 2	C	238	244	anti-parallel
Strand 3	C	268	271	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	357	360	first strand
Strand 2	E	86	89	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	550	552	first strand
Strand 2	C	558	560	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	5	7	first strand
Strand 2	D	26	30	parallel
Strand 3	D	36	40	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	282	284	first strand
Strand 2	D	348	350	parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	294	297	first strand
Strand 2	D	332	335	anti-parallel
Strand 3	D	310	312	anti-parallel
Strand 4	D	318	320	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	606	607	first strand
Strand 2	D	625	626	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	68	first strand
Strand 2	E	95	104	anti-parallel
Strand 3	E	107	108	anti-parallel

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There are 3 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	61	68	first strand
Strand 2	E	95	104	anti-parallel
Strand 3	E	112	117	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	124	127	first strand
Strand 2	E	130	134	anti-parallel
Strand 3	E	445	447	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	385	388	first strand
Strand 2	E	137	140	anti-parallel
Strand 3	E	464	465	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	145	first strand
Strand 2	E	150	153	anti-parallel
Strand 3	E	158	170	anti-parallel
Strand 4	E	173	181	anti-parallel

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There are 6 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	144	145	first strand
Strand 2	E	150	153	anti-parallel
Strand 3	E	158	170	anti-parallel
Strand 4	E	248	250	anti-parallel
Strand 5	E	265	266	anti-parallel
Strand 6	E	229	230	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 9RJS

Analysis of interatomic Contacts of Structural Units in PDB entry:
9RJS